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Imperfect SSR Finder

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posted on 2023-11-30, 08:20 authored by Daniel L. Stieneke, Imad Eujayl

The Imperfect SSR Finder is an online tool to help geneticists find Simple Sequence Repeats (SSR), aka microsatellites or Short Tandem Repeats (STR), in uploaded FASTA sequences.

The Imperfect SSR Finder is an interactive website to help you find imperfect (and perfect) SSRs. You can test small snippets or upload large files, change the lengths and types of the SSRs your are looking for, and create output with SSRs in inverted case and/or color highlights. A tabular information file is also created in .CSV format, for easy import into any spreadsheet program.

Resources in this dataset:

Resource Title: Imperfect SSR Finder.

File Name: Web Page, url: https://ssr.nwisrl.ars.usda.gov/

Funding

Agricultural Research Service

History

Data contact name

Eujayl, Imad

Data contact email

Imad.Eujayl@ARS.USDA.GOV

Publisher

United States Department of Agriculture

Theme

Not specified

ISO Topic Category

environment

National Agricultural Library Thesaurus terms

computer software; microsatellite repeats; nucleotides; Biological Sciences

OMB Bureau Code

005:18 - Agricultural Research Service

OMB Program Code

005:040 - National Research

Pending citation

Public Access Level

Public

Preferred dataset citation

Stieneke , Daniel L.; Eujayl, Imad (2019). Imperfect SSR Finder. United States Department of Agriculture.

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Keywords

computer software microsatellite repeats nucleotides Biological Sciences

Licence

CC0

Exports

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