U.S. flag

An official website of the United States government

Other Access

The information on this page (the dataset metadata) is also available in these formats:

JSON RDF

via the DKAN API

Data Extent

Ladona fulva Official Gene Set ladful_OGSv1.0

This dataset presents the Ladona fulva Official Gene Set (OGS) v1.0. The OGS v1.0 is an integration of automatic gene predictions from Ladona fulva genome annotations v0.5.3 (https://10.15482/USDA.ADC/1503790), with manual annotations by the research community (https://data.nal.usda.gov/dataset/ladona-fulva-manual-annotations-genome..., performed via the Apollo manual curation software, http://genomearchitect.org/). Manual and automated annotations were lifted over from genome assembly Ladona fulva genome assembly v1.0 (https://10.15482/USDA.ADC/1503789) to genome assembly Lful_2.0 (https://www.ncbi.nlm.nih.gov/assembly/GCA_000376725.2) using the coordinates_conversion and remap-gff3 programs (https://github.com/NAL-i5K/coordinates_conversion/; https://github.com/NAL-i5K/remap-gff3) and mapping files generated by NCBI's Genome remapping service (https://www.ncbi.nlm.nih.gov/genome/tools/remap). 1,015 annotations were removed from the original datasets during this process, due to changes in the new genome assembly, or due to quality problems with the original gene models. Identifiers and names for these gene models are listed in this file: deleted_models.txt.

The OGS v1.1 differs from OGS v1.0 in that it contains NCBI GenBank protein accession numbers. The GenBank accession GCA_000376725.2 also contains these annotations.

More information about this dataset can be found here:
https://doi.org/10.1186/s13059-019-1925-7

FieldValue
Tags
Modified
2021-10-25
Release Date
2021-02-18
Identifier
fd70b3a9-f5ca-4b4d-9629-9e50ee0c1477
Spatial / Geographical Coverage Area
POINT (49.66667 7.5)
Publisher
Ag Data Commons
Spatial / Geographical Coverage Location
Rheinland-Pfalz, Germany
Temporal Coverage
May 7, 2011
License
Contact Name
Poelchau, Monica
Contact Email
Public Access Level
Public