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Leptinotarsa decemlineata genome annotations v0.5.3

The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents the Leptinotarsa decemlineata gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Leptinotarsa decemlineata genome assembly 1.0. Further annotation method details will be available in a forthcoming publication.

NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained.

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use

Dataset Info

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FieldValue
Authors
Schoville, Sean
(ORCID)
Chen, Yolanda
(ORCID)
Andersson, Martin
(ORCID)
Benoit, Joshua B.
(ORCID)
Bhandari, Anita
Bowsher, Julia
(ORCID)
Brevik, Kristian
(ORCID)
Cappelle, Kaat
(ORCID)
Chen, Mei-Ju
(ORCID)
Childers, Anna
(ORCID)
Childers, Christopher
(ORCID)
Christiaens, Olivier
Clements, Justin
(ORCID)
Elpidina, Elena
(ORCID)
Engsontia, Patamarerk
(ORCID)
Friedrich, Markus
(ORCID)
García-Robles, Inmaculada
(ORCID)
Goswami, Chandan
Grapputo, Alessandro
(ORCID)
Gruden, Kristina
(ORCID)
Grynberg, Marcin
(ORCID)
Henrissat, Bernard
(ORCID)
Jennings, Emily C.
(ORCID)
Jones, Jeffery W.
Kalsi, Megha
Khan, Sher
(ORCID)
Kumar, Abhishek
Li, Fei
Lombard, Vincent
Ma, Xingzhou
Martynov, Alexander
(ORCID)
Miller, Nicholas
Mitchell, Robert F.
Munoz-Torres, Monica
(ORCID)
Muszewska, Anna
(ORCID)
Oppert, Brenda
(ORCID)
Palli, Subba R.
(ORCID)
Panfilio, Kristen A.
(ORCID)
Pauchet, Yannick
(ORCID)
Perkin, Lindsey
(ORCID)
Petek, Marko
(ORCID)
Poelchau, Monica
(ORCID)
Record, Eric
(ORCID)
Rinehart, Joseph P.
(ORCID)
Robertson, Hugh M.
(ORCID)
Rosendale, Andrew J.
(ORCID)
Ruiz-Arroyo, Victor-Manuel
(ORCID)
Smagghe, Guy
(ORCID)
Szendrei, Zsofia
(ORCID)
Szuter, Elise M.
Thomas, Gregg
Torson, Alex
(ORCID)
Vargas Jentzsch, Iris M.
(ORCID)
Weirauch, Matthew
(ORCID)
Yates, Ashley
Yocum, George D.
(ORCID)
Yoon, June-Sun
(ORCID)
Richards, Stephen
(ORCID)
Product Type
Genome/Genetics Data
Spatial / Geographical Coverage Location
Long Island
Contact Name
Schoville, Sean
Contact Email
Public Access Level
Public
Related Content
License
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1391716
Program Code
005:037 - Department of Agriculture - Research and Education
Bureau Code
005:18 - Agricultural Research Service
Modified Date
2018-12-10
Release Date
2017-09-13
Ag Data Commons Keywords: 
  • Genomics & Genetics
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Genome
  • Genome annotation
State or Territory: 
ISO Topic(s):