Other Access

The information on this page (the dataset metadata) is also available in these formats:

JSON RDF

Leptinotarsa decemlineata Official Gene set v1.2

The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The L. decemlineata research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. OGSv1.1 is an integration of automatic gene predictions from Maker (performed by Dan Hughes at Baylor College of Medicine) with manual annotations by the research community (done via the Apollo manual annotation software). The coordinates of OGSv1.1 were converted to the latest genome assembly, GCF_000500325.1, using coordinates_conversion and remap-gff3, to generate OGSv1.2.

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use

Dataset Info

These fields are compatible with DCAT, an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web.
FieldValue
Authors
Schoville, Sean
(ORCID)
Chen, Yolanda
(ORCID)
Poelchau, Monica
(ORCID)
Hughes, Daniel S.T.
Robertson, Hugh M.
(ORCID)
Benoit, Joshua B.
(ORCID)
Rosendale, Andrew J.
(ORCID)
Jones, Jeffery W.
Palli, Subba R.
(ORCID)
Kumar, Abhishek
Ruiz-Arroyo, Victor-Manuel
(ORCID)
Childers, Anna
(ORCID)
Bowsher, Julia
(ORCID)
Cappelle, Kaat
(ORCID)
Clements, Justin
(ORCID)
Engsontia, Patamarerk
(ORCID)
García-Robles, Inmaculada
(ORCID)
Grapputo, Alessandro
(ORCID)
Jennings, Emily C.
(ORCID)
Vargas Jentzsch, Iris M.
(ORCID)
Kalsi, Megha
Li, Fei
Lorenzen, Marcé D.
Ma, Xingzhou
Martynov, Alexander
(ORCID)
Miller, Nicholas
Mitchell, Robert F.
Munoz-Torres, Monica
(ORCID)
Panfilio, Kristen A.
(ORCID)
Pauchet, Yannick
(ORCID)
Petek, Marko
(ORCID)
Rinehart, Joseph P.
(ORCID)
Szuter, Elise M.
Torson, Alex
(ORCID)
Yates, Ashley
Yocum, George D.
(ORCID)
Andersson, Martin
(ORCID)
Khan, Sher
(ORCID)
Richards, Stephen
(ORCID)
Product Type
Genome/Genetics Data
Equipment or Software Used
Publisher
Ag Data Commons
Contact Name
Schoville, Sean
Contact Email
Public Access Level
Public
Related Article

Schoville, S., Chen, Y., Andersson, M., Benoit, J., Bhandari, A., & Bowsher, J. et al. (2018). A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). Scientific Reports, 8(1).

Related Content
License
Funding Source(s)
National Human Genome Research Institute
U54 HG003273
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1457533
Modified Date
2018-12-10
Release Date
2018-06-20
Ag Data Commons Keywords: 
  • Genomics & Genetics
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Genome
  • Genome annotation
National Agricultural Library Thesaurus Term: 
ISO Topic(s):