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Leptinotarsa decemlineata Official Gene set v1.2

The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The L. decemlineata research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. OGSv1.1 is an integration of automatic gene predictions from Maker (performed by Dan Hughes at Baylor College of Medicine) with manual annotations by the research community (done via the Apollo manual annotation software). The coordinates of OGSv1.1 were converted to the latest genome assembly, GCF_000500325.1, using coordinates_conversion and remap-gff3, to generate OGSv1.2.

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use

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FieldValue
Tags
Insects
i5k
Leptinotarsa decemlineata
Colorado Potato Beetle
Organism project
Modified
2023-10-02
Release Date
2018-06-28
Identifier
91b95abd-a3ab-4e4c-9211-5eeefbfd6769
Spatial / Geographical Coverage Area
POLYGON ((-414.42626953125 2.0357034842292, -414.42626953125 6.1551180860219, -411.56982421875 6.1551180860219, -411.56982421875 2.0357034842292))
POLYGON ((-529.892578125 50.326758435042, -529.892578125 72.091936180224, -489.111328125 72.091936180224, -489.111328125 50.326758435042))
POLYGON ((-494.6484375 14.150766165464, -494.6484375 48.613533667479, -420.8203125 48.613533667479, -420.8203125 14.150766165464))
POLYGON ((-521.630859375 17.532309292203, -521.630859375 24.420473295394, -513.544921875 24.420473295394, -513.544921875 17.532309292203))
POLYGON ((-377.9296875 38.456445292247, -377.9296875 79.215276293484, -169.1015625 79.215276293484, -169.1015625 38.456445292247))
POLYGON ((-328.7109375 -12.32570540982, -328.7109375 39.549224717665, -194.4140625 39.549224717665, -194.4140625 -12.32570540982))
Publisher
Ag Data Commons
Temporal Coverage
January 1, 2018
License
Creative Commons Attribution Share-Alike
Contact Name
Schoville, Sean
Contact Email
sean.schoville@wisc.edu
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
Schoville, Sean (ORCID)
Chen, Yolanda (ORCID)
Poelchau, Monica (ORCID)
Hughes, Daniel S.T. (Scopus Author ID)
Robertson, Hugh M. (ORCID)
Benoit, Joshua B. (ORCID)
Rosendale, Andrew J. (ORCID)
Jones, Jeffery W. (Scopus Author ID)
Palli, Subba R. (ORCID)
Kumar, Abhishek (Scopus Author ID)
Ruiz-Arroyo, Victor-Manuel (ORCID)
Childers, Anna (ORCID)
Bowsher, Julia (ORCID)
Cappelle, Kaat (ORCID)
Clements, Justin (ORCID)
Engsontia, Patamarerk (ORCID)
García-Robles, Inmaculada (ORCID)
Grapputo, Alessandro (ORCID)
Jennings, Emily C. (ORCID)
Vargas Jentzsch, Iris M. (ORCID)
Kalsi, Megha (Scopus Author ID)
Li, Fei (Scopus Author ID)
Lorenzen, Marcé D. (Scopus Author ID)
Ma, Xingzhou (Scopus Author ID)
Martynov, Alexander (ORCID)
Miller, Nicholas (Scopus Author ID)
Mitchell, Robert F. (Scopus Author ID)
Munoz-Torres, Monica (ORCID)
Panfilio, Kristen A. (ORCID)
Pauchet, Yannick (ORCID)
Petek, Marko (ORCID)
Rinehart, Joseph P. (ORCID)
Szuter, Elise M. (Scopus Author ID)
Torson, Alex (ORCID)
Yates, Ashley (Scopus Author ID)
Yocum, George D. (ORCID)
Andersson, Martin (ORCID)
Khan, Sher (ORCID)
Richards, Stephen (ORCID)
Peer Reviewed
No
Equipment or Software Used
remap-gff3
Funding Sources
National Human Genome Research Institute
U54 HG003273
Related Articles

Schoville, S. D., Chen, Y. H., Andersson, M. N., Benoit, J. B., Bhandari, A., Bowsher, J. H., Brevik, K., Cappelle, K., Chen, M.-J. M., Childers, A. K., Childers, C., Christiaens, O., Clements, J., Didion, E. M., Elpidina, E. N., Engsontia, P., Friedrich, M., García-Robles, I., Gibbs, R. A., … Richards, S. (2018). A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). Scientific Reports, 8(1). https://doi.org/10.1038/s41598-018-20154-1
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1457533
Product Type
Dataset
Related Content
Leptinotarsa decemlineata Official Gene set v1.1
Leptinotarsa decemlineata genome assembly 1.0
IsVersionOf: Leptinotarsa decemlineata Official Gene set v1.1
FieldValue
OSTI Identifier
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
genomics
Leptinotarsa decemlineata
genes
prediction
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Genome
  • Genome annotation
Program
Insects 5K – i5K
Organism project
Leptinotarsa decemlineata

Suggested Citation:

(dataset) Schoville, Sean; Chen, Yolanda; Poelchau, Monica; Hughes, Daniel S.T.; Robertson, Hugh M.; Benoit, Joshua B.; Rosendale, Andrew J.; Jones, Jeffery W.; Palli, Subba R.; Kumar, Abhishek; Ruiz-Arroyo, Victor-Manuel; Childers, Anna; Bowsher, Julia; Cappelle, Kaat; Clements, Justin; Engsontia, Patamarerk; García-Robles, Inmaculada; Grapputo, Alessandro; Jennings, Emily C.; Vargas Jentzsch, Iris M.; Kalsi, Megha; Li, Fei; Lorenzen, Marcé D.; Ma, Xingzhou; Martynov, Alexander; Miller, Nicholas; Mitchell, Robert F.; Munoz-Torres, Monica; Panfilio, Kristen A.; Pauchet, Yannick; Petek, Marko; Rinehart, Joseph P.; Szuter, Elise M.; Torson, Alex; Yates, Ashley; Yocum, George D.; Andersson, Martin; Khan, Sher; Richards, Stephen (2018). Leptinotarsa decemlineata Official Gene set v1.2. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1457533. Accessed 2023-12-04.