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Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES

This dataset contains manual annotations from Rhyzopertha dominica community curators, based on genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are direct exports from Apollo 2.6 (https://doi.org/10.5281/zenodo.5015109), hosted by the i5k Workspace@NAL (https://i5k.nal.usda.gov/). Manual annotations are temporary and will be reviewed by the i5k Workspace@NAL and submitted to NCBI's GenBank database after review.

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FieldValue
Tags
genome annotation
Insects
i5k
Rhyzopertha dominica
Modified
2022-09-07
Release Date
2022-03-08
Identifier
b6a27899-6111-48df-a310-8c44a217ce0f
Spatial / Geographical Coverage Area
POINT (-96.6297555 39.190887)
Publisher
Ag Data Commons
Temporal Coverage
March 4, 2022
License
Creative Commons Attribution Share-Alike
Contact Name
Oppert, Brenda
Contact Email
bso@ksu.edu
Public Access Level
Public
Program Code
005:040 - Department of Agriculture - National Research
Bureau Code
005:18 - Agricultural Research Service
Extended Metadata: 
FieldValue
Authors
Oppert, Brenda (ORCID)
Schlipalius, David (ORCID)
Scully, Erin (ORCID)
Bansal, Raman (Scopus Author ID)
Ragan, Gail
Fabrick, Jeffrey (ORCID)
Maille, Jacqueline
Chaply, Konstantin
Friesen, Kenlee (Scopus Author ID)
Lorenzen, Marce (ORCID)
Dias, Renata (ORCID)
Kuwar, Suyog (ORCID)
Olmstead, Morgan (ORCID)
Poelchau, Monica (ORCID)
Peer Reviewed
No
Intended Use
The data supports the annotations from the publication: Oppert, B.; Muszewska, A.; Steczkiewicz, K.; Šatović-Vukšić, E.; Plohl, M.; Fabrick, J.A.; Vinokurov, K.S.; Koloniuk, I.; Johnston, J.S.; Smith, T.P.L.; Guedes, R.N.C.; Terra, W.R.; Ferreira, C.; Dias, R.O.; Chaply, K.A.; Elpidina, E.N.; Tereshchenkova, V.F.; Mitchell, R.F.; Jenson, A.J.; McKay, R.; Shan, T.; Cao, X.; Miao, Z.; Xiong, C.; Jiang, H.; Morrison, W.R., III; Koren, S.; Schlipalius, D.; Lorenzen, M.D.; Bansal, R.; Wang, Y.-H.; Perkin, L.; Poelchau, M.; Friesen, K.; Olmstead, M.L.; Scully, E.; Campbell, J.F. The Genome of Rhyzopertha dominica (Fab.) (Coleoptera: Bostrichidae): Adaptation for Success. Genes 2022, 13, 446. https://doi.org/10.3390/genes13030446
Use Limitations
The annotations in this dataset were the result of an automated annotation by Dovetail Genomics with manual annotation from coauthors of the publication. The data will be submitted to NCBI and will be considered in their automated annotation pipeline.
Equipment or Software Used
Apollo v2.6.5
Funding Sources
National Institute of General Medical Sciences
R01GM58634
National Human Genome Research Institute
Narodowe Centrum Nauki
2017/25/B/NZ2/01880
Narodowe Centrum Nauki
2019/35/D/NZ2/03411
Oklahoma Agricultural Experiment Station
OKLO2450
Primary Article

Oppert, B., Muszewska, A., Steczkiewicz, K., Šatović-Vukšić, E., Plohl, M., Fabrick, J., Vinokurov, K., Koloniuk, I., Johnston, J., Smith, T., Guedes, R., Terra, W., Ferreira, C., Dias, R., Chaply, K., Elpidina, E., Tereshchenkova, V., Mitchell, R., Jenson, A., … Campbell, J. (2022). The Genome of Rhyzopertha dominica (Fab.) (Coleoptera: Bostrichidae): Adaptation for Success. Genes, 13(3), 446. https://doi.org/10.3390/genes13030446

AgID: 7713030
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1524749
Product Type
Dataset
FieldValue
OSTI Identifier
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
data collection
Rhyzopertha dominica
genome assembly
exports
genetic databases
insect pests
storage insects
Insects and Entomology
Biological Sciences
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Genome
  • Genome assembly
  • Genomics & Genetics
  • Genome
  • Genome annotation
  • Agroecosystems & Environment
  • Agroecosystems & Environment
  • Agricultural pests
Program
Rhyzopertha dominica
Organism project
Insects 5K – i5K

Suggested Citations:

(original article) Oppert, B., Muszewska, A., Steczkiewicz, K., Šatović-Vukšić, E., Plohl, M., Fabrick, J., Vinokurov, K., Koloniuk, I., Johnston, J., Smith, T., Guedes, R., Terra, W., Ferreira, C., Dias, R., Chaply, K., Elpidina, E., Tereshchenkova, V., Mitchell, R., Jenson, A., … Campbell, J. (2022). The Genome of Rhyzopertha dominica (Fab.) (Coleoptera: Bostrichidae): Adaptation for Success. Genes, 13(3), 446. https://doi.org/10.3390/genes13030446

(dataset) Oppert, Brenda; Schlipalius, David; Scully, Erin; Bansal, Raman; Ragan, Gail; Fabrick, Jeffrey; Maille, Jacqueline; Chaply, Konstantin; Friesen, Kenlee; Lorenzen, Marce; Dias, Renata; Kuwar, Suyog; Olmstead, Morgan; Poelchau, Monica (2022). Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1524749. Accessed 2023-12-05.