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Microplitis demolitor Official Gene Set micdem_OGSv1.0

Microplitis demolitor (Hymenoptera: Braconidae) is a parasitoid used as a biological control agent to control larval-stage Lepidoptera and serves as a model for studying the function and evolution of symbiotic viruses in the genus Bracovirus.

This dataset presents the Microplitis demolitor Official Gene Set (OGS) v1.0. The OGS is an integration of automatic gene predictions from Microplitis demolitor genome annotations NCBI-RefSeq's gene set NCBI Microplitis demolitor Annotation Release 101 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Microplitis_demolitor...), with manual annotations by the research community, performed via the Apollo manual curation software (https://zenodo.org/record/1295754#.YDgLyJNKivg). Manual annotations were QC'd via the GFF3toolkit (https://github.com/NAL-i5K/gff3toolkit) and NCBI's table2asn_GFF software (https://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/table2...), and merged with NCBI Microplitis demolitor Annotation Release 101 via the GFF3toolkit (https://github.com/NAL-i5K/gff3toolkit).

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FieldValue
Tags
genome annotation
Microplitis demolitor
Modified
2021-03-18
Release Date
2021-03-18
Identifier
b1d375bd-284e-45c4-bdfc-b6dda8a50c8a
Spatial / Geographical Coverage Area
POINT (151.27 -27.18)
Publisher
Ag Data Commons
Temporal Coverage
March 1, 2021
License
Creative Commons Attribution Share-Alike
Contact Name
Burke, Gaelen
Contact Email
grburke@uga.edu
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
Tims, Kelly (Google Scholar)
Burke, Gaelen (Scopus Author ID)
Peer Reviewed
No
Equipment or Software Used
GFF3toolkit software
Apollo manual curation software
table2asn_GFF
Funding Sources
National Science Foundation
DEB1916788
Primary Article

Burke, G. R., Walden, K. K. O., Whitfield, J. B., Robertson, H. M., & Strand, M. R. (2018). Whole Genome Sequence of the Parasitoid Wasp Microplitis demolitor That Harbors an Endogenous Virus Mutualist. G3 Genes|Genomes|Genetics, 8(9), 2875-2880. https://doi.org/10.1534/g3.118.200308
Related Articles

Burke, G. R., Walden, K. K. O., Whitfield, J. B., Robertson, H. M., & Strand, M. R. (2014). Widespread Genome Reorganization of an Obligate Virus Mutualist. PLoS Genetics, 10(9), e1004660. https://doi.org/10.1371/journal.pgen.1004660
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1521095
Product Type
Dataset
Cites Other Datasets
NCBI Microplitis demolitor Annotation Release 101
Related Content
Genes of viral origin in the Microplitis demolitor genome
FieldValue
OSTI Identifier
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
genomics
genes
prediction
genome assembly
Microplitis demolitor
biological control agents
parasitoids
Bracovirus
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genome
  • Genome annotation
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
Program
Microplitis demolitor
Organism project
Insects 5K – i5K

Suggested Citations:

(original article) Burke, G. R., Walden, K. K. O., Whitfield, J. B., Robertson, H. M., & Strand, M. R. (2018). Whole Genome Sequence of the Parasitoid Wasp Microplitis demolitor That Harbors an Endogenous Virus Mutualist. G3 Genes|Genomes|Genetics, 8(9), 2875-2880. https://doi.org/10.1534/g3.118.200308

(dataset) Tims, Kelly; Burke, Gaelen (2021). Microplitis demolitor Official Gene Set micdem_OGSv1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1521095. Accessed 2023-06-04.