U.S. flag

An official website of the United States government

License

Creative Commons Attribution Share-Alike
[Open Data]

Other Access

The information on this page (the dataset metadata) is also available in these formats:

JSON RDF

via the DKAN API

Data Extent

Social

Neodiprion lecontei Official Gene Set v1.1

This dataset presents the Neodiprion Official Gene Set (OGS) v1.1. It was generated using Maker v2.31.8, followed by CrossMap re-mapping of coordinates to genome assembly Nlec1.1 (https://www.ncbi.nlm.nih.gov/assembly/GCA_001263575.2/).

This dataset is now obsolete - a new genome assembly, iyNeoleco1.1 (https://www.ncbi.nlm.nih.gov/assembly/GCF_021901455.1) has been produced by the Ag100Pest project, with annotations from NCBI's RefSeq resource.

See all >>
FieldValue
Tags
i5k
arthropods
Neodiprion lecontei
Modified
2022-08-24
Release Date
2022-08-24
Identifier
72b4fd9e-9646-4a51-8c64-383d88a75197
Spatial / Geographical Coverage Area
POINT (-84.5037 38.0406)
Publisher
Ag Data Commons
Temporal Coverage
May 1, 2018
License
Creative Commons Attribution Share-Alike
Contact Name
Geib, Scott
Contact Email
scott.geib@usda.gov
Public Access Level
Public
Program Code
005:040 - Department of Agriculture - National Research
Bureau Code
005:18 - Agricultural Research Service
Extended Metadata: 
FieldValue
Authors
Geib, Scott (ORCID)
Linnen, Catherine (ORCID)
Peer Reviewed
No
Equipment or Software Used
Maker v2.31.8
CrossMap
Funding Sources
Agricultural Research Service
Primary Article

Vertacnik, K. L., Herrig, D. K., Godfrey, R. K., Hill, T., Geib, S. M., Unckless, R. L., Nelson, D. R., & Linnen, C. R. (2021). Ecological correlates of gene family size in a pine-feeding sawfly genome and across Hymenoptera. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2021.03.14.435331
Related Articles

Linnen, C. R., O’Quin, C. T., Shackleford, T., Sears, C. R., & Lindstedt, C. (2018). Genetic Basis of Body Color and Spotting Pattern in Redheaded Pine Sawfly Larvae (<i>Neodiprion lecontei</i>). Genetics, 209(1), 291-305. https://doi.org/10.1534/genetics.118.300793
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1527886
Product Type
Dataset
Related Content
Neodiprion lecontei genome assembly Nlec1.0
FieldValue
OSTI Identifier
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
genomics
genes
nucleotide sequences
sequence analysis
Neodiprion lecontei
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Genome
  • Genome annotation
Program
Insects 5K – i5K
Organism project
Neodiprion lecontei

Suggested Citations:

(original article) Vertacnik, K. L., Herrig, D. K., Godfrey, R. K., Hill, T., Geib, S. M., Unckless, R. L., Nelson, D. R., & Linnen, C. R. (2021). Ecological correlates of gene family size in a pine-feeding sawfly genome and across Hymenoptera. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2021.03.14.435331

(dataset) Geib, Scott; Linnen, Catherine (2022). Neodiprion lecontei Official Gene Set v1.1. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1527886. Accessed 2023-06-06.