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Oncopeltus fasciatus Official Gene set v1.1

The Oncopeltus fasciatus genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine.
The O. fasciatus research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.1.

Oncopeltus fasciatus has been an established lab organism for over 60 years, and has been used for a wide range of studies from physiology to development and evolution. As a relatively conservative and generalized species, it affords a baseline against which other species can be compared.

For example, this species has the same piercing and sucking type mouthparts as its less benign relatives, including the blood-sucking kissing bug, Rhodnius prolixus, and the brown marmorated stink bug, Halyomorpha halys, which are disease vector and agricultural pest species, respectively. Unlike the pest species, the benign, seed-feeding Oncopeltus can be functionally investigated in the lab by RNA interference (RNAi). Comparing the genomes, and conducting experimental lab work in Oncopeltus, will help to identify unique features of the pest species, and thus inform management strategies for them.

More generally, Oncopeltus is a key species for comparisons across the insects. It is one of the few experimentally tractable hemimetabolous species that can ground comparisons with the completely metamorphosing species of the Holometabola (e.g., flies, beetles, wasps). Topics investigated in this framework include reproductive biology and development of the legs, wings, body segments, extraembryonic membranes, and overall establishment of the body plan.

This dataset presents the Oncopeltus fasciatus Official Gene Set (OGS) v1.1. The OGS is an integration of automatic gene predictions from Maker (done by Dan Hughes at Baylor) with manual annotations by the research community (done via Web Apollo).

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use

Dataset Info

These fields are compatible with DCAT, an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web.
FieldValue
Authors
Vargas Jentzsch, Iris M.
(ORCID)
Hughes, Daniel S.T.
Poelchau, Monica
(ORCID)
Robertson, Hugh M.
(ORCID)
Benoit, Joshua B.
(ORCID)
Rosendale, Andrew J.
(ORCID)
Armisén, David
(ORCID)
Duncan, Elizabeth J.
(ORCID)
Vreede, Barbara M.I.
Jacobs, Chris G.C.
(ORCID)
Berger, Chloe
Burnett, Denielle L.
Chang, Chun-che
Chen, Yen-Ta
Chipman, Ariel D.
(ORCID)
Cridge, Andrew
(ORCID)
Crumière, Antonin
(ORCID)
Dearden, Peter
(ORCID)
Erezyilmaz, Deniz F.
(ORCID)
Extavour, Cassandra
(ORCID)
Friedrich, Markus
(ORCID)
Horn, Thorsten
Hsiao, Yi-min
Jones, Jeffery W.
Jones, Tamsin E.
Khila, Abderrahman
(ORCID)
Leask, Megan
Lovegrove, Mackenzie R.
Lu, Hsiao-ling
Lu, Yong
Nair, Ajay
Palli, Subba R.
(ORCID)
Pick, Leslie
Porter, Megan L.
Refki, Peter N.
Rivera Pomar, Rolando
Roth, Siegfried
Sachs, Lena
Santos, Maria Emilia
Seibert, Jan
(ORCID)
Sghaier, Essia
Shukla, Jayendra N.
(ORCID)
Suzuki, Yuichiro
(ORCID)
Tidswell, Olivia
Traverso, Lucila
van der Zee, Maurijn
(ORCID)
Viala, Severine
(ORCID)
Richards, Stephen
(ORCID)
Panfilio, Kristen A.
(ORCID)
Product Type
Genome/Genetics Data
Contact Name
Poelchau, Monica
Contact Email
Public Access Level
Public
Related Article

Sharma, A.I., Yanes, K.O., Jin, L., Garvey, S.L., Taha, S.M., Suzuki, Y. (2016), The phenotypic plasticity of developmental modules, EvoDevo 7(15):1-14

Related Content
License
Funding Source(s)
Agricultural Research Service
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1173142
Program Code
005:037 - Department of Agriculture - Research and Education
Bureau Code
005:18 - Agricultural Research Service
Modified Date
2019-02-12
Release Date
2015-03-21
Ag Data Commons Keywords: 
  • Genomics & Genetics
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