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oruabi_OGS_v1-0.tar.gz (19.92 MB)

Orussus abietinus Official Gene Set OGSv1.0

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posted on 2024-02-13, 13:07 authored by Jan Philip Oeyen, Daniel S.T. Hughes, Stephen Richards, Bernhard Misof, Oliver Niehuis

The Orussus abietinus genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Orussus abietinus research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. The general procedure for generating this OGS is outlined here: https://github.com/NAL-i5K/I5KNAL_OGS/wiki. OGSv1.0 was generated by merging gene set OABI-V0.5.3-Models generated by the Baylor College of Medicine, and community-curated models in the Apollo software, after QC of the Apollo output.


Resources in this dataset:

  • Resource Title: Orussus abietinus Official Gene Set OGSv1.0.

    File Name: oruabi_OGS_v1-0.tar.gz

    Resource Description: The attached tar.gz archive (fraocc_OGS_v1.0.tar.gz) contains the following files:

    • ORUABI_OGSv1-0_CDS.fa. CDS sequences of Orussus abietinus genome annotations OGSv1.0.

    • ORUABI_OGSv1-0_peptide.fa. Amino acid sequences of Orussus abietinus genome annotations OGSv1.0.

    • ORUABI_OGSv1-0_transcript.fa. Transcript sequences of Orussus abietinus genome annotations OGSv1.0.

    • ORUABI_OGSv1-0.gff3.gz. Gff3 of all gene predictions of Orussus abietinus genome annotations OGSv1.0

    • ORUABI_Manual2OGSv1.0_id_mapping.log. A mapping file describing ID and name updates from dataset Orussus abietinus genome annotations v0.5.3.

    • readme_oruabi_OGSv1-0_release. This file briefly describes how the Orussus abietinus Official Gene Set OGSv1.0 was generated.

Funding

National Human Genome Research Institute: U54 HG003273

History

Data contact name

Oeyen, Jan Philip

Data contact email

janphilipoyen@gmail.com

Publisher

Ag Data Commons

Theme

  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; Orussus abietinus; genes; prediction; models

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Oeyen, Jan Philip; Hughes, Daniel S.T.; Richards, Stephen; Misof, Bernhard; Niehuis, Oliver (2018). Orussus abietinus Official Gene Set OGSv1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1459558

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