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The Porcine Translational Research Database

The data in the Porcine Translational Research Database is supported by >5800 references, and contains 65 data fields for each entry, including >9700 full length (5′ and 3′) unambiguous pig sequences, >2400 real time PCR assays and reactivity information on >1700 antibodies. It also contains gene and/or protein expression data for >2200 genes and identifies and corrects errors (gene duplications artifacts, mis-assemblies, mis-annotations, and incorrect species assignments) for >2,000 porcine genes. This database is the largest manually curated database for any single veterinary species and is unique among porcine gene databases in regard to linking gene expression to gene function, identifying related gene pathways, and connecting data with other porcine gene database.

Dataset Info

These fields are compatible with DCAT, an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web.
FieldValue
Authors
Dawson , Harry D.
(ORCID)
Chen, Celine
Gaynor, Brady J.
(ORCID)
Shao, Jonathan
(ORCID)
Urban, Joseph F.
(ORCID)
Product Type
Database
Spatial / Geographical Coverage Location
Beltsville Human Nutrition Research Center, 10300 Baltimore, Ave. Beltsville, MD
Temporal Coverage
2004-01-01/
Frequency
Monthly
Equipment or Software Used
Intended Use
To provide a centralized, manually-curated source of genomic and proteomic information for swine in biomedical research.
Use Limitations
The database provides data for approximately 1/2 of the genome. Furthermore the database, as currently formatted, only provides the sequence for the longest RNA transcript or protein.
Publisher
USDA Agricultural Research Service
Contact Name
Dawson, Harry
Contact Email
Public Access Level
Public
Primary Article

Dawson, H. D., Chen, C., Gaynor, B., Shao, J., & Urban, J. F., Jr. (2017). The porcine translational research database: a manually curated, genomics and proteomics-based research resource. BMC Genomics, 18(1), 643.

License
Reviewer
Wang, Thomas
Funding Source(s)
Agricultural Research Service
1235-51000-055-00D
Program Code
005:037 - Department of Agriculture - Research and Education
Bureau Code
005:18 - Agricultural Research Service
Modified Date
2019-05-07
Release Date
2017-12-05
Ag Data Commons Keywords: 
  • Genomics & Genetics
  • Online database
State or Territory: 
User-supplied Tags: 
ISO Topic(s):