Raw Sequences of 17 Aspergillus Genomes from Ethiopia
Raw genome sequencing data of 17 isolates of Aspergillus flavus and Aspergillus parasiticus collected from peanuts from Ethiopia. These isolates were selected as representative of the genetic diversity of Aspergillus section Flavi found colonizing peanut seeds in four peanut-farming districts of Ethiopia, these are Darolabu, Gursum, Fedis, and Babile.
Resources in this dataset:
Resource Title: E1201_R1.
File Name: E1201_S52_L008_R1_001.fastq.gz
Resource Title: E1201_R2.
File Name: E1201_S52_L008_R2_001.fastq.gz
Resource Title: E1236_R1.
File Name: E1236_S53_L008_R1_001.fastq.gz
Resource Title: E1236_R2.
File Name: E1236_S53_L008_R2_001.fastq.gz
Resource Title: E1275_R1.
File Name: E1275_S55_L008_R1_001.fastq.gz
Resource Title: E1275_R2.
File Name: E1275_S55_L008_R2_001.fastq.gz
Resource Title: E1288_R1.
File Name: E1288_S56_L008_R1_001.fastq.gz
Resource Title: E1288_R2.
File Name: E1288_S56_L008_R2_001.fastq.gz
Resource Title: E1293_R1.
File Name: E1293_S57_L008_R1_001.fastq.gz
Resource Title: E1293_R2.
File Name: E1293_S57_L008_R2_001.fastq.gz
Resource Title: E1316_R1.
File Name: E1316_S58_L008_R1_001.fastq.gz
Resource Title: E1316_R2.
File Name: E1316_S58_L008_R2_001.fastq.gz
Resource Title: E1319_R1.
File Name: E1319_S59_L008_R1_001.fastq.gz
Resource Title: E1319_R2.
File Name: E1319_S59_L008_R2_001.fastq.gz
Resource Title: E1337_R1.
File Name: E1337_S60_L008_R1_001.fastq.gz
Resource Title: E1337_R2.
File Name: E1337_S60_L008_R2_001.fastq.gz
Resource Title: E1345_R1.
File Name: E1345_S61_L008_R1_001.fastq.gz
Resource Title: E1345_R2.
File Name: E1345_S61_L008_R2_001.fastq.gz
Resource Title: E1348_R1.
File Name: E1348_S62_L008_R1_001.fastq.gz
Resource Title: E1348_R2.
File Name: E1348_S62_L008_R2_001.fastq.gz
Resource Title: E1365_R1.
File Name: E1365_S63_L008_R1_001.fastq.gz
Resource Title: E1365_R2.
File Name: E1365_S63_L008_R2_001.fastq.gz
Resource Title: E1376_R1.
File Name: E1376_S64_L008_R1_001.fastq.gz
Resource Title: E1376_R2.
File Name: E1376_S64_L008_R2_001.fastq.gz
Resource Title: E1402_R1.
File Name: E1402_S65_L008_R1_001.fastq.gz
Resource Title: E1402_R2.
File Name: E1402_S65_L008_R2_001.fastq.gz
Resource Title: E1404_R1.
File Name: E1404_S66_L008_R1_001.fastq.gz
Resource Title: E1404_R2.
File Name: E1404_S66_L008_R2_001.fastq.gz
Resource Title: E1406_R1.
File Name: E1406_S67_L008_R1_001.fastq.gz
Resource Title: E1406_R2.
File Name: E1406_S67_L008_R2_001.fastq.gz
Resource Title: E1443_R1.
File Name: E1443_S69_L008_R1_001.fastq.gz
Resource Title: E1443_R2.
File Name: E1443_S69_L008_R2_001.fastq.gz
Resource Title: E1445_R1.
File Name: E1445_S70_L008_R1_001.fastq.gz
Resource Title: E1445_R2.
File Name: E1445_S70_L008_R2_001.fastq.gz
Funding
USDA-ARS: 6044-21000-005-00D
United States Agency for International Development: Agreement 58-0210-3-0012
History
Data contact name
Arias, ReneeData contact email
Renee.Arias@USDA.GOVPublisher
Ag Data CommonsIntended use
The availability of the raw data sequences will allow readers to use different software for genome assembly, or verify specific regions of the assembled genomes submitted to GenBank-National Center for Biotechnology Information (NCBI). The sequencing data were generated using Illumina HiSeq 4000 Pair-End reads 150 base pairs (bp).Use limitations
These are raw data, thus, it is recommended to trim the sequencing data for possible presence of adapters and to eliminate low quality reads before processing.Temporal Extent Start Date
2014-01-01Temporal Extent End Date
2014-12-31Theme
- Not specified
Geographic Coverage
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Districts of Gursum, Fedis, Darolabu and Babile, EthiopiaISO Topic Category
- biota
Ag Data Commons Group
- AgBioData
National Agricultural Library Thesaurus terms
genome; Ethiopia; sequence analysis; Aspergillus flavus; Aspergillus parasiticus; peanuts; genetic variation; seeds; aflatoxins; nucleotide sequencesOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 301
- 303
Primary article PubAg Handle
Pending citation
- No
Public Access Level
- Public