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Creative Commons CCZero
[Open Data]

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TERRA-REF Season 4 and 6 Sorghum phenotypes and agronomic metadata in BrAPI format

picture of TERRA REF field scanner in Maricopa, AZ

This data represents a small subset of the TERRA-REF release available on Dryad (LeBauer et al 2020, https://doi.org/10.5061/dryad.4b8gtht99). In addition to harvested biomass for each cultivar, it includes plot location, planting date, harvest date, fertilizer application, genotype / accession names and metadata, and additional agronomic management metadata for a population of Sorghum bicolor evaluated over two growing seasons. Please refer to the parent dataset for additional information on experimental details.

This dataset also contains an archive of software used to translate BrAPI formatted data into ARDN-compliant formats. The code and intermediate files used to demonstrate a run of the crop model DSSAT can be viewed on GitHub https://github.com/cct-datascience/ardn-terra-ref.

One way in which the data can be accessed is through a BrAPI-compliant endpoint at terraref.org/brapi. This dataset is a snapshot of the TERRA-REF BrAPI endpoint contents, representing the minimum data and metadata required to run a crop model. These BrAPI-compliant json files were downloaded from terraref.org/brapi. BrAPI is a data format widely used by plant breeders, and is described in Selby et al. 2019, https://doi.org/10.1093/bioinformatics/btz190

This a parent item for the following datasets:

TERRA-REF Season 4 and 6 Sorghum phenotypes and agronomic metadata in BrAPI format: ARDN Products
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FieldValue
Tags
Field-based high-throughput phenotyping
biomass yield
ARDN-dev
EARTH SCIENCE > AGRICULTURE > AGRICULTURAL PLANT SCIENCE > PLANT BREEDING AND GENETICS
BrAPI
Modified
2022-10-11
Release Date
2022-10-11
Frequency
Irregularly
Identifier
44aa549b-fdb1-447f-acc8-6e26a3c88ed4
Spatial / Geographical Coverage Area
POLYGON ((-111.9747967 33.0764953, -111.9747966 33.0745228, -111.9750963 33.074485715, -111.9750964 33.0764584, -111.9747967 33.0764953))
Publisher
Ag Data Commons
Spatial / Geographical Coverage Location
Agricultural research field under the field scanner at the University of Arizona Maricopa Agricultural Center in Maricopa, Arizona
Temporal Coverage
April 20, 2018 to August 2, 2018
License
Creative Commons CCZero
Contact Name
LeBauer, David
Contact Email
dlebauer@arizona.edu
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
LeBauer, David (ORCID)
Peer Reviewed
No
Intended Use
This data is intended for use for crop modeling. It is the first attempt to convert BrAPI-compliant data into the standard format used by crop models in the AgMIP project.
Use Limitations
These data are in the public domain. These are made available here for inclusion in the Agricultural Research Data Network, in a format defined by the AgMIP Crop Experiment format. Please cite LeBauer et al 2020 doi:10.5061/dryad.4b8gtht99
Funding Sources
Advanced Research Projects Agency - Energy
DE-AR0000598
Primary Article

LeBauer, D., Burnette, M., Fahlgren, N., Kooper, R., McHenry, K. & Stylianou, A. (2021). What Does TERRA-REF's High Resolution, Multi Sensor Plant Sensing Public Domain Data Offer the Computer Vision Community? arXiv eprint 2107.14072. https://arxiv.org/abs/2107.14072
Method Citation

LeBauer, David et al. (2020), Data From: TERRA-REF, An open reference data set from high resolution genomics, phenomics, and imaging sensors, Dryad, Dataset, https://doi.org/10.5061/dryad.4b8gtht99

Burnette, M., Kooper, R., Maloney, J. D., Rohde, G. S., Terstriep, J. A., Willis, C., Fahlgren, N., Mockler, T., Newcomb, M., Sagan, V., Andrade-Sanchez, P., Shakoor, N., Sidike, P., Ward, R., & LeBauer, D. (2018). TERRA-REF Data Processing Infrastructure. In , & , Proceedings of the Practice and Experience on Advanced Research Computing. ACM. https://doi.org/10.1145/3219104.3219152
Dataset DOI (digital object identifier)
10.5061/dryad.4b8gtht99
Product Type
Dataset
Cites Other Datasets
Data From: TERRA REF, An Open Reference Data Set From High Resolution Genomics, Phenomics, and Imaging Sensors
Related Content
Data From: TERRA REF, An Open Reference Data Set From High Resolution Genomics, Phenomics, and Imaging Sensors
Preferred Dataset Citation
LeBauer et al 2020 "Data From: TERRA REF, An Open Reference Data Set From High Resolution Genomics, Phenomics, and Imaging Sensors", Dryad, 10.5061/dryad.4b8gtht99
FieldValue
ISO Topic(s)
biota
State or Territory
Arizona
National Agricultural Library Thesaurus Term
phenotype
metadata
scanners
Arizona
biomass
cultivars
planting date
harvest date
fertilizer application
genotype
Sorghum bicolor
growing season
data collection
crop models
plant breeders
digital images
genomics
meteorological data
phenomics
color
field methods
algorithms
databases
plant breeding
durum wheat
winter
artificial intelligence
image analysis
engineering
agronomy
Ag Data Commons Keywords
  • Agroecosystems & Environment
  • Plants & Crops
  • Plants & Crops
  • Crop production
  • Genomics & Genetics
  • Genomics & Genetics
  • Phenotypes
  • Agricultural Products
  • Agricultural Products
  • Plants
  • Agricultural Products
  • Plants
  • Grain
Program
ARDN

Suggested Citations:

(original article) LeBauer, D., Burnette, M., Fahlgren, N., Kooper, R., McHenry, K. & Stylianou, A. (2021). What Does TERRA-REF's High Resolution, Multi Sensor Plant Sensing Public Domain Data Offer the Computer Vision Community? arXiv eprint 2107.14072. https://arxiv.org/abs/2107.14072

(dataset) LeBauer et al 2020 "Data From: TERRA REF, An Open Reference Data Set From High Resolution Genomics, Phenomics, and Imaging Sensors", Dryad, 10.5061/dryad.4b8gtht99