TERRA-REF Season 6 phenotypes and agronomic metadata in BrAPI format

picture of TERRA REF field scanner in Maricopa, AZ

This data represents a small subset of the TERRA-REF release available on Dryad (LeBauer et al 2020). In addition to harvested biomass for each cultivar, it includes plot location, planting date, harvest date, fertilizer application, genotype / accession names and metadata, and additional agronomic management metadata for a population of Sorghum bicolor evaluated over two growing seasons.

One way in which the data can be accessed is through a BrAPI-compliant endpoint at terraref.org/brapi. This dataset is a snapshot of the TERRA-REF BrAPI endpoint contents, representing the minimum data and metadata required to run a crop model. These BrAPI-compliant json files were downloaded from terraref.org/brapi. BrAPI is a data format widely used by plant breeders, and is described in Selby et al. 2019, https://doi.org/10.1093/bioinformatics/btz190

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Field	Value
Tags	Field-based high-throughput phenotyping biomass yield ARDN-dev EARTH SCIENCE > AGRICULTURE > AGRICULTURAL PLANT SCIENCE > PLANT BREEDING AND GENETICS BrAPI
Modified	2022-08-24
Release Date	2021-10-01
Frequency	Irregularly
Identifier	35127731-693b-49c7-8513-064bb495ebeb
Spatial / Geographical Coverage Area	POLYGON ((-111.9747967 33.0764953, -111.9747966 33.0745228, -111.9750963 33.074485715, -111.9750964 33.0764584, -111.9747967 33.0764953))
Publisher	Ag Data Commons
Spatial / Geographical Coverage Location	Agricultural research field under the field scanner at the University of Arizona Maricopa Agricultural Center in Maricopa, Arizona
Temporal Coverage	April 13, 2017 to August 2, 2018
License	Creative Commons CCZero
Contact Name	LeBauer, David
Contact Email	dlebauer@arizona.edu
Public Access Level	Public

Extended Metadata:

Field	Value
Authors	LeBauer, David (ORCID)
Peer Reviewed	No
Intended Use	This data is intended for use for crop modeling. It is the first attempt to convert BrAPI-compliant data into the standard format used by crop models in the AgMIP project.
Use Limitations	These data are in the public domain. These are made available here for inclusion in the Agriultural Research Data Network, in a format defined by the AgMIP Crop Experiment format. Please cite LeBauer et al 2020 doi:10.5061/dryad.4b8gtht99
Funding Sources	Advanced Research Projects Agency - Energy DE-AR0000598
Primary Article	LeBauer, D., Burnette, M., Fahlgren, N., Kooper, R., McHenry, K. & Stylianou, A. (2021). What Does TERRA-REF's High Resolution, Multi Sensor Plant Sensing Public Domain Data Offer the Computer Vision Community? arXiv eprint 2107.14072. https://arxiv.org/abs/2107.14072
Method Citation	LeBauer, David et al. (2020), Data From: TERRA-REF, An open reference data set from high resolution genomics, phenomics, and imaging sensors, Dryad, Dataset, https://doi.org/10.5061/dryad.4b8gtht99 Burnette, M., Kooper, R., Maloney, J. D., Rohde, G. S., Terstriep, J. A., Willis, C., Fahlgren, N., Mockler, T., Newcomb, M., Sagan, V., Andrade-Sanchez, P., Shakoor, N., Sidike, P., Ward, R., & LeBauer, D. (2018). TERRA-REF Data Processing Infrastructure. In , & , Proceedings of the Practice and Experience on Advanced Research Computing. ACM. https://doi.org/10.1145/3219104.3219152
Dataset DOI (digital object identifier)	10.5061/dryad.4b8gtht99
Product Type	Dataset
Cites Other Datasets	Data From: TERRA REF, An Open Reference Data Set From High Resolution Genomics, Phenomics, and Imaging Sensors
Preferred Dataset Citation	LeBauer et al 2020 "Data From: TERRA REF, An Open Reference Data Set From High Resolution Genomics, Phenomics, and Imaging Sensors", Dryad, 10.5061/dryad.4b8gtht99

Field	Value
ISO Topic(s)	biota
State or Territory	Arizona
National Agricultural Library Thesaurus Term	phenotype metadata scanners Arizona biomass cultivars planting date harvest date fertilizer application genotype Sorghum bicolor growing season data collection crop models plant breeders digital images genomics meteorological data phenomics color field methods algorithms databases plant breeding durum wheat winter artificial intelligence image analysis engineering agronomy
Ag Data Commons Keywords	Agroecosystems & Environment Plants & Crops Plants & Crops Crop production Genomics & Genetics Genomics & Genetics Phenotypes
Program	ARDN

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