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Trichogramma pretiosum genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Trichogramma pretiosum genome as part of the i5k pilot project. This dataset presents the Trichogramma pretiosum genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use. Scaffold 109 was identified to be a complete Wolbachia genome, and was removed from the assembly on GenBank and relocated to a separate record (https://www.ncbi.nlm.nih.gov/nuccore/NZ_CM003641.1).

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FieldValue
Tags
genome assembly
sequence analysis
Trichogramma pretiosum
Modified
2023-09-29
Release Date
2018-06-04
Identifier
f1800301-4e79-460d-b9c2-b518dcd92753
Publisher
Ag Data Commons
License
Creative Commons Attribution Share-Alike
Contact Name
Lindsey, Amelia
Contact Email
alind005@ucr.edu
Public Access Level
Public
Extended Metadata: 
FieldValue
Authors
Lindsey, Amelia R.I. (Scopus Author ID)
Kelkar, Yogeshwar D. (ORCID)
Wu, Xin (Scopus Author ID)
Sun, Dan (Scopus Author ID)
Martinson, Ellen O. (Scopus Author ID)
Yan, Zhichao (ORCID)
Rugman-Jones, Paul F. (Scopus Author ID)
Hughes, Daniel S.T. (Scopus Author ID)
Murali, Shwetha C. (Scopus Author ID)
Qu, Jiaxin (ORCID)
Dugan-Perez, Shannon (ORCID)
Lee, Sandra L. (ORCID)
Chao, Hsu (Scopus Author ID)
Dinh, Huyen (ORCID)
Han, Yi (ORCID)
Doddapaneni, Harshavardhan (ORCID)
Worley, Kim C. (ORCID)
Muzny, Donna M. (ORCID)
Ye, Gongyin (ORCID)
Gibbs, Richard A. (Scopus Author ID)
Richards, Stephen (ORCID)
Yi, Soojin V. (ORCID)
Stouthamer, Richard (Scopus Author ID)
Werren, John H. (ORCID)
Peer Reviewed
No
Funding Sources
National Human Genome Research Institute
U54 HG003273
Primary Article

Lindsey, A. R. I., Kelkar, Y. D., Wu, X., Sun, D., Martinson, E. O., Yan, Z., Rugman-Jones, P. F., Hughes, D. S. T., Murali, S. C., Qu, J., Dugan, S., Lee, S. L., Chao, H., Dinh, H., Han, Y., Doddapaneni, H. V., Worley, K. C., Muzny, D. M., Ye, G., … Werren, J. H. (2018). Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum. BMC Biology, 16(1). https://doi.org/10.1186/s12915-018-0520-9
Related Articles

Lindsey, A. R. I., Werren, J. H., Richards, S., & Stouthamer, R. (2016). Comparative Genomics of a Parthenogenesis-Inducing <i>Wolbachia</i> Symbiont. G3 Genes|Genomes|Genetics, 6(7), 2113-2123. https://doi.org/10.1534/g3.116.028449
Dataset DOI (digital object identifier)
10.15482/USDA.ADC/1440020
Product Type
Dataset
Related Content
Trichogramma pretiosum genome annotations v0.5.3
FieldValue
OSTI Identifier
ISO Topic(s)
biota
National Agricultural Library Thesaurus Term
genomics
genome
biotechnology
Ag Data Commons Keywords
  • Genomics & Genetics
  • Genomics & Genetics
  • Genome
  • Genomics & Genetics
  • Genome
  • Genome assembly
Program
Trichogramma pretiosum
Organism project
Insects 5K – i5K

Suggested Citations:

(original article) Lindsey, A. R. I., Kelkar, Y. D., Wu, X., Sun, D., Martinson, E. O., Yan, Z., Rugman-Jones, P. F., Hughes, D. S. T., Murali, S. C., Qu, J., Dugan, S., Lee, S. L., Chao, H., Dinh, H., Han, Y., Doddapaneni, H. V., Worley, K. C., Muzny, D. M., Ye, G., … Werren, J. H. (2018). Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum. BMC Biology, 16(1). https://doi.org/10.1186/s12915-018-0520-9

(dataset) Lindsey, Amelia R.I.; Kelkar, Yogeshwar D.; Wu, Xin; Sun, Dan; Martinson, Ellen O.; Yan, Zhichao; Rugman-Jones, Paul F.; Hughes, Daniel S.T.; Murali, Shwetha C.; Qu, Jiaxin; Dugan-Perez, Shannon; Lee, Sandra L.; Chao, Hsu; Dinh, Huyen; Han, Yi; Doddapaneni, Harshavardhan; Worley, Kim C.; Muzny, Donna M.; Ye, Gongyin; Gibbs, Richard A.; Richards, Stephen; Yi, Soojin V.; Stouthamer, Richard; Werren, John H. (2018). Trichogramma pretiosum genome assembly v1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1440020. Accessed 2023-12-08.