Ag Data Commons Maintenance - Monday 03/01/2021
The Ag Data Commons technical team needs to apply security updates to the system. This maintenance will take place on Monday, March 1, 2021, between 7:00 am ET and 12:00 pm ET. The website and application may experience brief, intermittent outages during this period. Avoid adding or editing datasets during this period to prevent losing information. A message will be sent to the Ag Data Commons registered users once all maintenance is complete.
About the i5k Workspace@NAL
The i5k Workspace (https://i5k.nal.usda.gov) is an inclusive genome portal for any arthropod genome project that would like to make use of our resources. We provide download services, BLAST, the JBrowse genome browser, and the Apollo manual curation service. Over 50 arthropod genomes are now part of the i5k Workspace, and users are encouraged to browse the genomes that we host, and contribute to the curation of each genome. For more information about the i5k Workspace, you can read our paper on the i5k Workspace, view our posters and talks, and find our software projects on github. The Ag Data Commons is now hosting a growing number of i5k Workspace datasets.
About the i5k initiative
The i5k initiative is a transformative project that aims to sequence and analyze the genomes of 5,000 arthropod species. The National Agricultural Library has partnered with the i5k initiative to create the i5k Workspace@NAL, which serves any ‘orphaned’ arthropod genome project's hosting needs. For more information about the i5k initiative, read the paper and visit the website.
RNA-Seq data were used with additional protein homology data for a MAKER automated annotation of the Drosophila biarmipes genome assembly Dbia 2.0
NOTE: This gene set is an unstable pre-release (v0.5.3), and is provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained.