i5k | Ag Data Commons

i5k Workspace

The i5k Workspace (https://i5k.nal.usda.gov) is an inclusive genome portal for any arthropod genome project that would like to make use of our resources. We provide download services, BLAST, the JBrowse genome browser, and the Apollo manual curation service. Over 50 arthropod genomes are now part of the i5k Workspace, and users are encouraged to browse the genomes that we host, and contribute to the curation of each genome. For more information about the i5k Workspace, you can read our paper on the i5k Workspace, view our posters and talks, and find our software projects on github. The Ag Data Commons is now hosting a growing number of i5k Workspace datasets.

About the i5k initiative

The i5k initiative is a transformative project that aims to sequence and analyze the genomes of 5,000 arthropod species. The National Agricultural Library has partnered with the i5k initiative to create the i5k Workspace@NAL, which serves any ‘orphaned’ arthropod genome project's hosting needs. For more information about the i5k initiative, read the paper and visit the website.

i5k Datasets

29 datasets

Lucilia cuprina genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Lucilia cuprina genome as part of the i5k pilot project. This dataset presents the Lucilia cuprina genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. This dataset is free for all use.

Parasteatoda tepidariorum genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Parasteatoda tepidariorum genome as part of the i5k pilot project. This dataset presents the Parasteatoda tepidariorum genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. This dataset is free for all use.

Orussus abietinus genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Orussus abietinus genome as part of the i5k pilot project. This dataset presents the Orussus abietinus genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource.

data

Loxosceles reclusa genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Loxosceles reclusa genome as part of the i5k pilot project. This dataset presents the Loxosceles reclusa genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. This dataset is free for all use.

Limnephilus lunatus genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Limnephilus lunatus genome as part of the i5k pilot project. This dataset presents the Limnephilus lunatus genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. This dataset is free for all use.

Ladona fulva genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Ladona fulva genome as part of the i5k pilot project. This dataset presents the Ladona fulva genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. This dataset is free for all use.

Ephemera danica genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Ephemera danica genome as part of the i5k pilot project. This dataset presents the Ephemera danica genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. This dataset is free for all use.

Copidosoma floridanum genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Copidosoma floridanum genome as part of the i5k pilot project. This dataset presents the Copidosoma floridanum genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource.This dataset is free for all use.

Ceratitis capitata genome assembly v1.1

The Baylor College of Medicine has sequenced and annotated the Ceratitis capitata genome as part of the i5k pilot project. This dataset presents the Ceratitis capitata genome v1.1. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. This dataset is free for all use.

Centruroides sculpturatus genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Centruroides sculpturatus genome as part of the i5k pilot project. This dataset presents the Centruroides sculpturatus genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. This dataset is free for all use.

Ag Data Commons migration begins October 18, 2023