Ag Data Commons Maintenance - Friday 03/31/23
The Ag Data Commons website and application may experience brief, intermittent outages due to network issues. Avoid adding or editing datasets during this period to prevent losing information.. We apologize for the inconvenience. This notice will be removed once the issue is resolved.
About the i5k Workspace@NAL
The i5k Workspace (https://i5k.nal.usda.gov) is an inclusive genome portal for any arthropod genome project that would like to make use of our resources. We provide download services, BLAST, the JBrowse genome browser, and the Apollo manual curation service. Over 50 arthropod genomes are now part of the i5k Workspace, and users are encouraged to browse the genomes that we host, and contribute to the curation of each genome. For more information about the i5k Workspace, you can read our paper on the i5k Workspace, view our posters and talks, and find our software projects on github. The Ag Data Commons is now hosting a growing number of i5k Workspace datasets.
About the i5k initiative
The i5k initiative is a transformative project that aims to sequence and analyze the genomes of 5,000 arthropod species. The National Agricultural Library has partnered with the i5k initiative to create the i5k Workspace@NAL, which serves any ‘orphaned’ arthropod genome project's hosting needs. For more information about the i5k initiative, read the paper and visit the website.
Asian giant hornet, Vespa mandarinia, genome assembly
Neodiprion lecontei genome assembly Nlec1.0
The Neodiprion lecontei (redheaded pine sawfly) genome, which consists of 7 chromosomes and 330 MB, is the first of 20 planned genomes for the lecontei species group.