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The Ag Data Commons is migrating

The Ag Data Commons is migrating to a new institutional portal on Figshare. The current system is available for search and download only. The new platform is open for submission with assistance from Ag Data Commons curators. Please contact NAL-ADC-Curator@usda.gov, if you need to publish or update your datasets.

i5k Workspace

About the i5k Workspace@NAL

The i5k Workspace (https://i5k.nal.usda.gov) is an inclusive genome portal for any arthropod genome project that would like to make use of our resources. We provide download services, BLAST, the JBrowse genome browser, and the Apollo manual curation service. Over 50 arthropod genomes are now part of the i5k Workspace, and users are encouraged to browse the genomes that we host, and contribute to the curation of each genome. For more information about the i5k Workspace, you can read our paper on the i5k Workspace, view our posters and talks, and find our software projects on github. The Ag Data Commons is now hosting a growing number of i5k Workspace datasets.

About the i5k initiative

The i5k initiative is a transformative project that aims to sequence and analyze the genomes of 5,000 arthropod species. The National Agricultural Library has partnered with the i5k initiative to create the i5k Workspace@NAL, which serves any ‘orphaned’ arthropod genome project's hosting needs. For more information about the i5k initiative, read the paper and visit the website.

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i5k Datasets

115 datasets

Blattella germanica genome annotations v0.5.3

    This dataset presents the Blattella germanica gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Blattella germanica genome assembly 1.0. This dataset is free for all use.

    Catajapyx aquilonaris genome annotations v0.5.3

      This dataset presents the Catajapyx aquilonaris gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Catajapyx aquilonaris genome assembly 1.0.This dataset is free for all use.

      Centruroides sculpturatus genome annotations v0.5.3

        This dataset presents the Centruroides sculpturatus gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Centruroides sculpturatus genome assembly 1.0. This dataset is free for all use.

        Copidosoma floridanum genome annotations v0.5.3

          This dataset presents the Copidosoma floridanum gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Copidosoma floridanum genome assembly 1.0. This dataset is free for all use.

          Ephemera danica genome annotations v0.5.3

            This dataset presents the Ephemera danica gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Ephemera danica genome assembly 1.0. This dataset is free for all use.

            Ladona fulva genome annotations v0.5.3

              This dataset presents the Ladona fulva gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Ladona fulva genome assembly 1.0. This dataset is free for all use.

              Latrodectus hesperus genome annotations v0.5.3

                This dataset presents the Latrodectus hesperus gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Latrodectus hesperus genome assembly 1.0. This dataset is free for all use.

                Limnephilus lunatus genome annotations v0.5.3

                  This dataset presents the Limnephilus lunatus gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Limnephilus lunatus genome assembly 1.0. This dataset is free for all use.

                  Loxosceles reclusa genome annotations v0.5.3

                    This dataset presents the Loxosceles reclusa gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Loxosceles reclusa genome assembly 1.0. This dataset is free for all use.

                    Parasteatoda tepidariorum genome annotations v0.5.3

                      This dataset presents the Parasteatoda tepidariorum gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Parasteatoda tepidariorum genome assembly 1.0. This dataset is free for all use.