The Water Quality Portal (WQP) is a cooperative service sponsored by the United States Geological Survey (USGS), the Environmental Protection Agency (EPA), and the National Water Quality Monitoring Council (NWQMC). It serves data collected by over 400 state, federal, tribal, and local agencies. Water quality…
The Climate Shield website hosts geospatial data and related information that describes specific locations of cold-water refuge streams for native Cutthroat Trout (Oncorhynchus clarkii) and Bull Trout (Salvelinus confluentus) across the American West. Forecasts about the locations of refugia could enable the protection of key watersheds, inform support among multiple stakeholders, and provide a foundation for planning climate-smart conservation networks that improve the odds of preserving native trout populations through the 21st century.
The Research Projects Database (RPD) provides current food safety research projects from both U.S. and international government, and non-government organizations.
The eDNA samples in the eDNAtlas database describe species occurrence locations and were collected by the U.S. Forest Service and numerous agencies that have partnered with the National Genomics Center for Wildlife and Fish Conservation (NGC) throughout the United States. The eDNAtlas is accessed via an interactive ArcGIS Online (AGOL) map that allows users to view and download sample site information and lab results of species occurrence for the U.S. The results are primarily based on samples analyzed at the National Genomics Center for Wildlife and Fish Conservation (NGC) and associated with geospatial attributes created by the Boise Spatial Streams Group (BSSG).
The bull trout (Salvelinus confluentus) eDNA survey results Online Map allows users to view the survey results in an interactive map by coupling 1) predictions from the range-wide, spatially precise Climate Shield model on the location of natal habitats of bull trout with 2) a sampling template for every 8-digit hydrologic unit in the historical range of bull trout, based on the probability of detecting bull trout presence using environmental DNA (eDNA) sampling. The map provides the ability to zoom in and look at an area of interest, as well as to create queries or select an area to download points as a shapefile.
Data from: Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome
The milkweed bug, Oncopeltus fasciatus, was sequenced as part of the i5k pilot project from Baylor College of Medicine (Illumina data). To augment those resources, we present here a hybrid genome assembly with low coverage PacBio data, assembled with PBJelly: the Oncopeltus fasciatus Hybrid Genome Assembly v1.0.
Association mapping is an efficient approach for the identification of the molecular basis of agronomic traits in crop plants. For this purpose in pea (Pisum sativum L.), we genotyped and phenotyped individual lines of the single-plant-derived core collection of the USDA pea collection including accessions…
Data from: Range size, local abundance and effect inform species descriptions at scales relevant for local conservation practice
This study describes how metrics defining invasions may be more broadly applied to both native and invasive species in vegetation management, supporting their relevance to local scales of species conservation and management. A sample monitoring dataset is used to compare range size, local abundance and effect as well as summary calculations of landscape penetration (range size × local abundance) and impact (landscape penetration × effect) for native and invasive species in the mixed-grass plant community of western North Dakota, USA.
Data from: Biological control of boxwood blight by Pseudomonas protegens recovered from recycling irrigation systems
A total of 1547 bacterial strains recovered from recycling irrigation systems were evaluated in vitro and in planta for their biological control efficacy against boxwood (Buxus spp.) blight caused by Calonectria pseudonaviculata (Cps), an emerging fungal disease in the United States. Pseudomonas protegens strains produced antifungal secondary metabolites that reduced Cps growth and infection.
Data from: Genome of the small hive beetle (Aethina tumida, Coleoptera: Nitidulidae), a worldwide parasite of social bee colonies, provides insights into detoxification and herbivory
The small hive beetle (Aethina tumida, ATUMI) is an invasive parasite of bee colonies. ATUMI feeds on both fruits and bee nest products, facilitating its spread and increasing its impact on honey bees and other pollinators. The ATUMI genome has been sequenced and annotated, providing the first genomic resources for this species and for the Nitidulidae.