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Orussus abietinus mitochondrial genome assembly

    The Baylor College of Medicine has sequenced and annotated the Orussus abietinus genome as part of the i5k pilot project. This dataset represents a targeted assembly and annotation of the mitochondrial genome.

    Athalia rosae mitochondrial genome assembly

      The Baylor College of Medicine has sequenced and annotated the Athalia rosae genome as part of the i5k pilot project. This dataset represents a separate targeted assembly of the mitochondrial genome.

      Data from: The assembled transcriptome of the adult horn fly, Haematobia irritans

        To better understand the adult horn fly, *Haematobia irritans irritans*, and the development of resistance in natural populations, an Illumina paired-end read HiSeq and GAII approach was used to determine the transcriptomes of untreated control adult females, untreated control adult males, permethrin-treated surviving adult males and permethrin + piperonyl butoxide-treated killed adult males from a Louisiana population of horn flies with a moderate level of pyrethroid resistance.

        myPhyloDB

          myPhyloDB is an open-source software package aimed at developing a user-friendly web-interface for accessing and analyzing all of your laboratory's microbial ecology data (currently supported project types: soil, air, water, microbial, and human-associated). The storage and handling capabilities of myPhyloDB archives users' raw sequencing files, and allows for easy selection of any combination of projects/samples from all of your projects using the built-in SQL database. The data processing capabilities of myPhyloDB are also flexible enough to allow the upload, storage, and analysis of pre-processed data or raw (454 or Illumina) data files using the built-in versions of Mothur and R.

          Leptinotarsa decemlineata Official Gene set v1.2

            The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The L. decemlineata research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. OGSv1.1 is an integration of automatic gene predictions from Maker (performed by Dan Hughes at Baylor College of Medicine) with manual annotations by the research community (done via the Apollo manual annotation software). The coordinates of OGSv1.1 were converted to the latest genome assembly, GCF_000500325.1, using coordinates_conversion and remap-gff3, to generate OGSv1.2.

            Complete Data and Analysis for: Fungicide Effectiveness on Soybean Rust in the Southeastern United States 2004-2014: A Meta-Analysis

              Soybean rust is a concern to soybean growers and management of soybean rust primarily depends on disease scouting and the timely use of fungicides. The goal of this study was to evaluate the efficacy of fungicide-use through a quantitative meta-analysis of data compiled from published and unpublished soybean fungicide trials across the southern United States from 2004 to 2014. The data included in this repository includes the complete dataset as a comma-separated-value file and all Program R code necessary to replicate the data processing, analysis, and graphing.

              Arctic Peregrine Falcon Abundance on Cliffs Along the Colville River, Alaska, 1981-2002 and Covariate Input Files

                This data set consists of fourteen data files. Rcode_arctic_peregrine_abundance.R contains R code that was used to analyze Arctic peregrine falcon data collected between 1981 and 2002. The code primarily uses the R package "UNMARKED" and is based on the Dail-Madsen model for estimating population abundance. To run this code in an R environment, download the file and open it in an R interpreter (such as RStudio). The remaining files are all covariate matrices that act as inputs to the R code.

                ELIGULUM-A regulates lateral branch and leaf development. Original figure files

                  TIFF and JPEG files for the photographs used in constructing figures and supplemental figures in the manuscript, "ELIGULUM-A regulates lateral branch and leaf development," submitted to Plant Physiology. The images document a mutation that alters most of the structures of the plant and how the ELIGULUM-A gene interacts with different developmental pathways. The Figure Legend files describe the images individually.