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Ag Data Commons migration begins October 18, 2023

The Ag Data Commons is migrating to a new platform – an institutional portal on Figshare. Starting October 18 the current system will be available for search and download only. Submissions will resume after the launch of our portal on Figshare in November. Stay tuned for details!

Updated Bottom Up Solution for Triacylglycerols

    This Microsoft Excel workbook (2.712 Mb) contains spreadsheets that implement the Updated Bottom Up Solution for Triacylglycerols that allows Critical Ratios that provide structural information from mass spectrometry to be used to reconstitute the original mass spectra from which they came. It contains spreadsheets that use the non-nested equations (Critical Limits explicitly shown), as well as spreadsheets that used the nested equations (Case determinations made with Critical Limits not explicitly shown).

    Quantification of TAGs by LC-MS

      This Microsoft Excel workbook contains spreadsheets for calculating response-factor normalized triacylglycerol (TAG) compositions from response factors derived from GC-FID of fatty acid methyl esters (FAME). This workbook (1.160 Mb) reads the output from a ThermoScientific XCalibur Quan Browser •Excel Short Report• (In XCalibur: File • Export data to Excel • Export Short Excel report), and requires input of the FA composition determined by GC-FID (manually entered or read from Excel spreadsheet [provided upon request]).

      Isotope-corrected Critical Ratio calculations

        This Microsoft Excel workbook (168.259 Mb) calculates Critical Ratios for triacylglycerols based on manually entered mass spectra, with isotope correction by isotope patterns calculated at www.ChemCalc.org. Average mass spectra across integrated peaks are manually entered according to the instructions in the Supplementary Material to the publication 'The Updated Bottom Up Solution for Mass Spectrometry of Soybean Oil in a Dietary Supplement Gelcap".

        Cimex lectularius Genome Annotations v0.5.3

          The Baylor College of Medicine recently sequenced and annotated the Cimex lectularius genome as part of the i5k pilot project. The C. lectularius research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. This dataset presents the Cimex lectularius gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Cimex lectularius genome assembly 1.0.

          Cimex Lectularius Genome Assembly 1.0

            The Baylor College of Medicine recently sequenced and annotated the Cimex lectularius genome as part of the i5k pilot project. The C. lectularius research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. This dataset presents the Cimex lectularius genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource.