The Triticeae Toolbox (T3) webportal hosts data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data from wheat and barley germplasm in the Triticeae CAP integrating rapidly expanding DNA marker and sequence data with traditional phenotypic data.
The NAL Agricultural Thesaurus (NALT) was first released by the National Agricultural Library in 2002, with in-depth coverage of agriculture, biology, and related disciplines. It contains over 135,000 terms, including 63,000 cross references, and is arranged into 17 subject categories which are used to…
A mathematical model is constructed to quantify the loss of resilience in collapsing honey bee colonies due to the presence of a strong Allee effect. In the model, recruitment and mortality of adult bees have substantial social components, with recruitment enhanced and mortality reduced by additional adult bee numbers.
This dataset contains all documents, the text and the pdf files, as well as the code used to carry out a term analysis of agriculturally relevant organisms in the Global Biodiversity Information Facility (GBIF).
myPhyloDB is an open-source software package aimed at developing a user-friendly web-interface for accessing and analyzing all of your laboratory's microbial ecology data (currently supported project types: soil, air, water, microbial, and human-associated). The storage and handling capabilities of myPhyloDB archives users' raw sequencing files, and allows for easy selection of any combination of projects/samples from all of your projects using the built-in SQL database. The data processing capabilities of myPhyloDB are also flexible enough to allow the upload, storage, and analysis of pre-processed data or raw (454 or Illumina) data files using the built-in versions of Mothur and R.
Complete Data and Analysis for: Fungicide Effectiveness on Soybean Rust in the Southeastern United States 2004-2014: A Meta-Analysis
Soybean rust is a concern to soybean growers and management of soybean rust primarily depends on disease scouting and the timely use of fungicides. The goal of this study was to evaluate the efficacy of fungicide-use through a quantitative meta-analysis of data compiled from published and unpublished soybean fungicide trials across the southern United States from 2004 to 2014. The data included in this repository includes the complete dataset as a comma-separated-value file and all Program R code necessary to replicate the data processing, analysis, and graphing.
Arctic Peregrine Falcon Abundance on Cliffs Along the Colville River, Alaska, 1981-2002 and Covariate Input Files
This data set consists of fourteen data files. Rcode_arctic_peregrine_abundance.R contains R code that was used to analyze Arctic peregrine falcon data collected between 1981 and 2002. The code primarily uses the R package "UNMARKED" and is based on the Dail-Madsen model for estimating population abundance. To run this code in an R environment, download the file and open it in an R interpreter (such as RStudio). The remaining files are all covariate matrices that act as inputs to the R code.
This repository contains the MiSeq sequencing data for fungal communities in a study on biofilters. The BioFilter.zip folder contains 42 FASTQ files. The project run summary report specifies additional information on how the FASTQ data were produced for the "Jason" fungal community samples.
Data, R Code, and Output Supporting "An Historical Overview and Update of Wolf-Moose Interactions in Northeastern Minnesota"
A historical overview and update of wolf-moose interactions in Northeastern Minnesota. Wildlife Society Bulletin." In this paper and data/R code, we explored relationships between wolf numbers, monitored in part of the Minnesota moose range, and moose calf:population and estimated log annual growth rates of moose in Northeast Minnesota.