The Maize Genetics Cooperation Stock Center is operated by USDA/ARS, located at the University of Illinois, Urbana/Champaign, and integrated with the National Plant Germplasm System (NPGS). The center serves the maize research community by collecting, maintaining and distributing seeds of maize genetic stocks, and providing information about maize stocks and the mutations they carry through the Maize Genetics and Genomics Database (MaizeGDB).
Data from: Data on xylem sap proteins from Mn- and Fe-deficient tomato plants obtained using shotgun proteomics
Consolidated proteomic data identified and quantified by shotgun proteomics and Progenesis LC-MS analyses from xylem sap collected from tomato plants grown in Fe- and Mn-sufficient control, as well as Fe-deficient and Mn-deficient conditions, are presented.
Data from: Comparative proteomics dataset of skimmed milk samples from Holstein and Jersey dairy cattle
The complete list of low-abundance proteins identified in Holstein and Jersey skimmed milk samples is provided in this dataset as well as the total number of distinct sequenced peptides and gene ontology functions for each protein. The relative abundance of a select few proteins is depicted using the SIEVE software.
Data from: Dataset of proinflammatory cytokine and cytokine receptor gene expression in rainbow trout (Oncorhynchus mykiss) measured using a novel GeXP multiplex, RT-PCR assay
The dataset includes expression values of a suite of immune-relevant genes in rainbow trout (Oncorhynchus mykiss), concentrating on tumor necrosis factor and interleukin-1 ligand/receptor systems and acute phase response genes.
Data from: Forest harvest dataset for northern Colorado Rocky Mountains (1984–2015) generated from a Landsat time series and existing forest harvest records
This dataset provides a shapefile containing approximately 3500 polygons with the location, extent, size, and year of clearcut harvest events occurring between 1984 and 2015 in forested areas of northern Colorado.
The Breeding API (BrAPI) Project is an effort to create a RESTful specification to enable interoperability among plant breeding databases. The Breeding API specifies a standard interface for plant phenotype/genotype databases to serve their data to crop breeding applications. It is a shared, open API, to be used by all data providers and data consumers who wish to participate.
BAR is a collection of web-based, user-friendly tools for exploring, visualizing, and analyzing large datasets from plants. Supported are expression data, Next-Gen sequence data, protein-protein interactions, polymorphisms / conservation, and protein 3-D structures.
The Genome Sequence Annotation Server (GenSAS) is an online platform that provides a pipeline for whole genome structural and functional annotation. Users can upload genome sequences and select from a variety of tools for repeat masking, prediction of gene models and other structural features as well as functional annotation tools. GenSAS integrates with JBrowse and Apollo to provide visualization and editing.
Data from: Dataset on characterization of recombinant interleukin-23α, IL-12p40 and IL-23 complex protein, which activates JAK-STAT signaling pathway in chicken cell lines using immunocytochemical staining
The data herein is related to the research article entitled "Functional analyses of the interaction of chicken interleukin 23 subunit p19 with IL-12 subunit p40 to form the IL-23 complex", where it is demonstrated that the chicken interleukin (IL)-23α, IL-12p40, and IL-23 complex regulates Th1, Th17, and Treg cytokine production through heterodimer receptors as well as a homodimer receptor consisting of IL-12Rβ1 and IL-23R, and activates the JAK/STAT signaling pathways.
The giant reed, Arundo donax, is a perennial grass species that has become an invasive plant in many countries. To establish a foundational molecular dataset, an llumina Hi-Seq protocol was used to sequence the transcriptome of actively growing shoots from an invasive genotype collected along the Rio Grande River, bordering Texas and Mexico. The assembly of 27,491 high confidence transcripts (≥200 bp) are reported with at least 70% coverage of known genes in other Poaceae species.