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Pachypsylla venusta genome annotations v0.5.3

    This dataset presents the Pachypsylla venusta gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Pachypsylla venusta genome assembly 1.0.

    Blattella germanica Official Gene Set OGSv1.0

      The *Blattella germanica* genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The *Blattella germanica* research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0.

      Maize Genetics Cooperation Stock Center Catalog of Stocks

        The Maize Genetics Cooperation Stock Center is operated by USDA/ARS, located at the University of Illinois, Urbana/Champaign, and integrated with the National Plant Germplasm System (NPGS). The center serves the maize research community by collecting, maintaining and distributing seeds of maize genetic stocks, and providing information about maize stocks and the mutations they carry through the Maize Genetics and Genomics Database (MaizeGDB).

        Maize-GAMER: GO Annotations, Methods, Evaluation and Review

          maize-GAMER is a collaborative project to improve the status of gene functional annotation in maize (*Zea mays*). The project has three main areas of focus, namely * Design a pipeline for the functional annotation of maize genes. * Use manually curated test data to evaluate the annotations and generate a best subset of annotations for use * Design a user friendly review system for the community to provide feedback and endorsements of the annotations

          BAR- The Bio-Analytic Resource for Plant Biology

            BAR is a collection of web-based, user-friendly tools for exploring, visualizing, and analyzing large datasets from plants. Supported are expression data, Next-Gen sequence data, protein-protein interactions, polymorphisms / conservation, and protein 3-D structures.

            Data from: Shoot transcriptome of the giant reed, Arundo donax

              The giant reed, *Arundo donax*, is a perennial grass species that has become an invasive plant in many countries. To establish a foundational molecular dataset, an llumina Hi-Seq protocol was used to sequence the transcriptome of actively growing shoots from an invasive genotype collected along the Rio Grande River, bordering Texas and Mexico. The assembly of 27,491 high confidence transcripts (≥200 bp) are reported with at least 70% coverage of known genes in other Poaceae species.

              Data from: Datasets for transcriptomic analyses of maize leaves in response to Asian corn borer feeding and/or jasmonic acid

                Corn's (*Zea mays*) response to initial insect damage involves a variety of changes to the levels of defensive enzymes, toxins, and communicative volatiles. Such a dramatic change secondary metabolism necessitates the regulation of gene expression at the transcript level. This *Data In Brief* paper summarizes the datasets of the transcriptome of corn plants in response to corn stalk borers (*Ostrinia furnacalis*) and/or methyl jasmonate (MeJA). Altogether, 39,636 genes were found to be differentially expressed.

                Gerris buenoi Official Gene set v1.0

                  The Gerris buenoi genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Gerris buenoi research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. The OGS is an integration of automatic gene predictions from Maker (performed by Dan Hughes at Baylor College of Medicine) with manual annotations by the research community (done via the Apollo manual annotation software).