genomics | Ag Data Commons

Ag Data Commons migration begins October 18, 2023

The Ag Data Commons is migrating to a new platform – an institutional portal on Figshare. Starting October 18 the current system will be available for search and download only. Submissions will resume after the launch of our portal on Figshare in November. Stay tuned for details!

Oncorhynchus mykiss isolate:Swanson DH Line Genome sequencing and assembly

National Center for Biotechnology Information

In an effort to improve the rainbow trout reference genome sequence, we have re-sequenced the doubled haploid Swanson line using PacBio long reads.

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Genome sequencing of Pectinophora gossypiella 4th instar female alternate pseudohaplotype

National Center for Biotechnology Information

Genome sequencing and assembly of Pectinophora gossypiella (Pink bollworm) was conducted by the USDA-ARS Ag100Pest Initiative.

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Genome sequencing of Aethina tumida (small hive beetle) adult male alternate pseudohaplotype

National Center for Biotechnology Information

Genome sequencing and assembly of Aethina tumida (small hive beetle) was conducted by the USDA-ARS Ag100Pest Initiative.

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Genome sequencing of Anthonomus grandis grandis adult male: alternate pseudohaplotype

National Center for Biotechnology Information

Genome sequencing and assembly of Anthonomus grandis grandis (boll weevil) was conducted by the USDA-ARS Ag100Pest Initiative.

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Amblyomma maculatum isolate:SK-2019 Genome sequencing and assembly

National Center for Biotechnology Information

The Gulf Coast tick, Amblyomma maculatum, is a vector of Rickettsia parkeri which causes a febrile infection in humans, and also of Hepatozoon americanum, a pathogen of dogs. The distribution of A.

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Chromosome set A (primarily mandarin-origin) of diploid Valencia sweet orange genome

National Center for Biotechnology Information

Chromosomal level phased assembly of ordinary diploid Valencia sweet orange genome

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Ascosphaera pollenicola strain:ATCC 62712 Genome sequencing and assembly

National Center for Biotechnology Information

Genome sequencing of a fungal bee symbiont as part of a comparative study of Ascosphaera fungi. This strain was isolated from Megachile rotundata pollen.

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Ascosphaera atra strain:ARSEF 5147 Genome sequencing and assembly

National Center for Biotechnology Information

Genome of the bee pathogen and ascomycete fungus Ascosphaera atra (ARSEF 5147). This is one of several part of comparative study of the Ascosphaera genus.

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Ascosphaera aggregata strain:USDA-ARS PIBMSR Wild2 Genome sequencing and assembly

National Center for Biotechnology Information

This strain of A aggregata came from a single spore isolate of Megachile rotundata by Agricultural Research Service Pollinating Insect Biology Management and Systematics Unit (USDA-ARS PIMBSR, Logan, Utah).

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Ascosphaera acerosa ATCC 201316 Genome sequencing and assembly

National Center for Biotechnology Information

Genome of the bee pathogen and ascomycete fungus Ascosphaera acerosa (ATCC 201316). This is one of several part of comparative study of the Ascosphaera genus.

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