genomics | Ag Data Commons

Parasteatoda tepidariorum genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Parasteatoda tepidariorum genome as part of the i5k pilot project. This dataset presents the Parasteatoda tepidariorum genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. This dataset is free for all use.

Parasteatoda tepidariorum genome annotations v0.5.3

This dataset presents the Parasteatoda tepidariorum gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Parasteatoda tepidariorum genome assembly 1.0. This dataset is free for all use.

Orussus abietinus genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Orussus abietinus genome as part of the i5k pilot project. This dataset presents the Orussus abietinus genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource.

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Orussus abietinus genome annotations v0.5.3

This dataset presents the Orussus abietinus gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Orussus abietinus genome assembly 1.0.

data

Loxosceles reclusa genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Loxosceles reclusa genome as part of the i5k pilot project. This dataset presents the Loxosceles reclusa genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. This dataset is free for all use.

Loxosceles reclusa genome annotations v0.5.3

This dataset presents the Loxosceles reclusa gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Loxosceles reclusa genome assembly 1.0. This dataset is free for all use.

Data from: Genomic structural differences between cattle and River Buffalo identified through comparative genomic and transcriptomic analysis

This work presents a dataset which characterizes genomic differences between water buffalo genome and the extensively studied cattle reference genome. This dataset is obtained after alignment of 14 river buffalo whole genome sequencing datasets to the cattle reference.

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Data from: Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.)

Loblolly pine (*Pinus taeda* L.) is one of the most widely planted and commercially important forest tree species in the USA and worldwide, and is an object of intense genomic research. However, whole genome resequencing in loblolly pine is hampered by its large size and complexity and a lack of a good reference. As a valid and more feasible alternative, entire exome sequencing was hence employed to identify the gene-associated single nucleotide polymorphisms (SNPs) and to genotype the sampled trees.

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Limnephilus lunatus genome annotations v0.5.3

This dataset presents the Limnephilus lunatus gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Limnephilus lunatus genome assembly 1.0. This dataset is free for all use.

Limnephilus lunatus genome assembly v1.0

The Baylor College of Medicine has sequenced and annotated the Limnephilus lunatus genome as part of the i5k pilot project. This dataset presents the Limnephilus lunatus genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. This dataset is free for all use.