Data from: Genome wide association study of thyroid hormone levels following challenge with porcine reproductive and respiratory syndrome virus
Porcine reproductive and respiratory syndrome virus (PRRSV) causes respiratory disease in piglets and reproductive disease in sows. Piglet and fetal serum thyroid hormone (i.e., T3 and T4) levels decrease rapidly in response to PRRSV infection. Our objective was to estimate genetic parameters and identify quantitative trait loci (QTL) for absolute T3 and/or T4 levels of piglets and fetuses challenged with PRRSV.
- 2x excel
Data from: Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
The following is taken directly from the introduction of the paper. In this study, we used a pure drift FST model [11] which assumes all animals originated from the same ancestral population. This model was applied to taurine and zebu animals to identify loci under selection. These two groups correspond to the main (and most ancestral) separation of domestic cattle, which in most but not all cases corresponds to animals adapted to tropical and temperate environments. The identification of such loci can aid in the identification of genes and genomic variants that are related to environmental adaptation and/or selection derived from human agro-pastoral activities.
Data from: Legacy genetics of Arachis cardenasii in the peanut crop - v2
This collection contains supplementary data for the manuscript "Legacy genetics of Arachis cardenasii in the peanut crop shows profound benefits of international seed exchange," which describes the impact of alleles from a wild relative of peanut, Arachis cardenasii, through analysis of those alleles across cultivars and breeding lines across many countries.
Data from: Genetic mapping and QTL analysis for peanut smut resistance
This collection contains supplementary information for the manuscript “Genetic mapping and QTL analysis for peanut smut resistance”, which reports the genetic map and quantitative trait loci associated with resistance to peanut smut, a disease caused by the fungus *Thecaphora frezii*. The information includes genotyping data of a 103 recombinant inbred line (RIL) population {susceptible *Arachis hypogaea* subsp. *hypogaea* × resistant synthetic amphidiploid [(*A. correntina* × *A. cardenasii*) × *A. batizocoi*]4×} and parental lines, generated with the Axiom_Arachis2 SNP array.
Data from: Legacy genetics of Arachis cardenasii in the peanut crop
This collection contains supplementary data for the manuscript "Legacy genetics of Arachis cardenasii in the peanut crop shows profound benefits of international seed exchange," which describes the impact of alleles from a wild relative of peanut, Arachis cardenasii, through analysis of those alleles across cultivars and breeding lines across many countries.
Evaluating accuracy of DNA pool construction based on white blood cell counts
Pooling individual samples prior to DNA extraction can mitigate the cost of DNA extraction and genotyping; however, these methods need to accurately generate equal representation of individuals within pools. This data set was generated to determine accuracy of pool construction based on white blood cell counts compared to two common DNA quantification methods. The dataset includes:
1) pooling allele frequencies (PAF) for all pools and individual animals computed from normalized intensities for red (X) and green (Y); PAF = X/(X+Y).
2) Genotypes or number of copies of B(green) allele (0,1,2).
3) Definitions for each sample.