Insects and Entomology | Ag Data Commons

Manual annotations of Rhyzopertha dominica genome assembly RdoDt3_Drdd8_decomES

This dataset contains manual annotations from Rhyzopertha dominica community curators, based on genome assembly RdoDt3_Drdd8_decomES.fasta.gz. These annotations are direct exports from Apollo 2.6 (https://doi.org/10.5281/zenodo.5015109), hosted by the i5k Workspace@NAL (https://i5k.nal.usda.gov/). Manual annotations are temporary and will be reviewed by the i5k Workspace@NAL and submitted to NCBI's GenBank database after review.

Data from: Plant Tissue Characteristics of Miscanthus x giganteus v2

As part of a study identifying relationships between environmental variables and insect distributions within a bioenergy crop, giant miscanthus (Miscanthus x giganteus) samples were collected in October 2016 at 33 locations within a field in southeast Georgia, USA. This dataset describes the chemical composition of giant miscanthus leaves and stems including the total carbon (TC) and nitrogen (TN) content, total macro- and micronutrients.

Drosophila elegans genome annotations v0.5.3 for genome assembly Dele02082011

This research on Drosophila elegans genomics is part of the Drosophila modENCODE project.The Baylor College of Medicine is studying the comparative genomics of eight species of Drosophila, including biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii. RNA-Seq data were used with additional protein homology data for a MAKER automated annotation of the Drosophila elegans genome assembly Dele02082011. This gene set is an unstable pre-release (v0.5.3), and is provided to facilitate manual curation and analyses. Gene identifiers from this gene set will not be maintained.

Drosophila eugracilis genome annotations v0.5.3 for genome assembly Deug05112011

This research on Drosophila eugracilis genomics is part of the Drosophila modENCODE project.The Baylor College of Medicine is studying the comparative genomics of eight species of Drosophila, including biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii. RNA-Seq data were used with additional protein homology data for a MAKER automated annotation of the Drosophila eugracilis genome assembly Deug05112011. This gene set is an unstable pre-release (v0.5.3), and is provided to facilitate manual curation and analyses. Gene identifiers from this gene set will not be maintained.

Drosophila kikkawai genome annotations v0.5.3 for genome assembly Dkik02082011

This research on Drosophila kikkawai genomics is part of the Drosophila modENCODE project.The Baylor College of Medicine is studying the comparative genomics of eight species of Drosophila, including biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii. RNA-Seq data were used with additional protein homology data for a MAKER automated annotation of the Drosophila kikkawai genome assembly Dkik02082011. This gene set is an unstable pre-release (v0.5.3), and is provided to facilitate manual curation and analyses. Gene identifiers from this gene set will not be maintained.

Drosophila ficusphila genome annotations v0.5.3 for genome assembly Dfic02082011

This research on Drosophila ficusphila genomics is part of the Drosophila modENCODE project.The Baylor College of Medicine is studying the comparative genomics of eight species of Drosophila, including biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii. RNA-Seq data were used with additional protein homology data for a MAKER automated annotation of the Drosophila ficusphila genome assembly Dfic02082011. This gene set is an unstable pre-release (v0.5.3), and is provided to facilitate manual curation and analyses. Gene identifiers from this gene set will not be maintained.

Drosophila rhopaloa genome annotations v0.5.3 for genome assembly Drho05162011

This research on Drosophila rhopaloa genomics is part of the Drosophila modENCODE project.The Baylor College of Medicine is studying the comparative genomics of eight species of Drosophila, including biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii. RNA-Seq data were used with additional protein homology data for a MAKER automated annotation of the Drosophila rhopaloa genome assembly Drho05162011. This gene set is an unstable pre-release (v0.5.3), and is provided to facilitate manual curation and analyses. Gene identifiers from this gene set will not be maintained.

Drosophila takahashii genome annotations v0.5.3 for genome assembly Dbip02082011

This research on Drosophila takahashii genomics is part of the Drosophila modENCODE project.The Baylor College of Medicine is studying the comparative genomics of eight species of Drosophila, including biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii. RNA-Seq data were used with additional protein homology data for a MAKER automated annotation of the Drosophila takahashii genome assembly Dtak02082011. This gene set is an unstable pre-release (v0.5.3), and is provided to facilitate manual curation and analyses. Gene identifiers from this gene set will not be maintained.

Drosophila bipectinata genome annotations v0.5.3 for genome assembly Dbip02082011

This research on Drosophila bipectinata genomics is part of the Drosophila modENCODE project.The Baylor College of Medicine is studying the comparative genomics of eight species of Drosophila, including biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii. RNA-Seq data were used with additional protein homology data for a MAKER automated annotation of the Drosophila bipectinata genome assembly Dbip02082011. This gene set is an unstable pre-release (v0.5.3), and is provided to facilitate manual curation and analyses. Gene identifiers from this gene set will not be maintained.

Drosophila takahashii genome assembly Dtak02082011

This research on Drosophila takahashii genomics is part of the Drosophila modENCODE project. The Baylor College of Medicine is studying the comparative genomics of eight species of Drosophila, including biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii. The genome assembly presented here is the pre-submission version of Dtak_2.0, which is archived at the National Center for Biotechnology as GCA_000224235.2.