nucleotide sequences | Ag Data Commons

Data from: Characterization of Levilactobacillus brevis genotypes and phenotypes from industrial cucumber fermentation identifies the presence of 1,2-propanediol metabolosomes in the species

xlsx

Data from: Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential

Influenza A virus in swine hemagglutinin (HA) gene sequence data for 9 virus strains.

fasta

Annotation Data from: Genome Resources of Four Distinct Pathogenic Races Within Fusarium oxysporum f. sp. vasinfectum that Cause Vascular Wilt Disease of Cotton

Whole genome sequence (WGS) based identifications are being increasingly used by regulatory and public health agencies to facilitate the detection, investigation, and control of pathogens and pests. Fusarium oxysporum f. sp. vasinfectum is a significant vascular wilt pathogen of cultivated cotton and consists of several pathogenic races that are not each other’s closest phylogenetic relatives. We have developed WGS assemblies for isolates of F. oxysporum f. sp. vasinfectum race 1 (FOV1), race 4 (FOV4), race 5 (FOV5), and race 8 (FOV8) using a combination of Nanopore (MinION) and Illumina sequencing technology (Mi-Seq).

4x bin

Angus Sequence Dataset Collection

Whole genome sequence data for Bovidae Bos taurus - beef Angus, 30 animals in total. The data is in "fastq" format.

Effect of Holstein genotype on immune response to an intramammary Escherichia coli challenge

The objective of this study was to determine the effects of Holstein genotype on innate immune response in an experimental intramammary Escherichia coli challenge model.