phenotype | Ag Data Commons

Data from: Genomic structural differences between cattle and River Buffalo identified through comparative genomic and transcriptomic analysis

This work presents a dataset which characterizes genomic differences between water buffalo genome and the extensively studied cattle reference genome. This dataset is obtained after alignment of 14 river buffalo whole genome sequencing datasets to the cattle reference.

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Maize Genetics Cooperation Stock Center Catalog of Stocks

The Maize Genetics Cooperation Stock Center is operated by USDA/ARS, located at the University of Illinois, Urbana/Champaign, and integrated with the National Plant Germplasm System (NPGS). The center serves the maize research community by collecting, maintaining and distributing seeds of maize genetic stocks, and providing information about maize stocks and the mutations they carry through the Maize Genetics and Genomics Database (MaizeGDB).

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BrAPI

The Breeding API (BrAPI) Project is an effort to create a RESTful specification to enable interoperability among plant breeding databases. The Breeding API specifies a standard interface for plant phenotype/genotype databases to serve their data to crop breeding applications. It is a shared, open API, to be used by all data providers and data consumers who wish to participate.

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Data from: Microarray analysis of subcutaneous adipose tissue from mature cows with divergent body weight gain after feed restriction and realimentation

This study evaluates differentially expressed genes identified in subcutaneous adipose tissue collected from cows divergent in body weight (BW) gain after feed restriction and realimentation.

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Data from: Infestation ratings database for soybean aphid on early-maturity wild soybean lines

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Ricebase

Ricebase ([https://ricebase.org](https://ricebase.org)) is an integrative genomic database for rice (Oryza sativa) with an emphasis on combining datasets in a way that maintains the key links between past and current genetic studies. Ricebase includes DNA sequence data, gene annotations, nucleotide variation data and molecular marker fragment size data.

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Cassavabase

The Next Generation Cassava Breeding (NEXTGEN Cassava) project aims to significantly increase the rate of genetic improvement in cassava breeding and unlock the full potential of cassava, a staple crop central to food security and livelihoods across Africa. The project will implement and empirically test a new breeding method known as Genomic Selection that relies on statistical modeling to predict cassava performance before field-testing, and dramatically accelerates the breeding cycle.

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Panzea

Panzea is an NSF-funded project called "Biology of Rare Alleles in Maize and its Wild Relatives". We are investigating the connection between phenotype (what we see) and genotype (the genes underlying the phenotype) - of complex traits in maize and its wild relative, teosinte, and specifically in how rare genetic variations contribute to overall plant function. These studies will enrich our knowledge of evolution, sustainable agriculture, and genetic diversity and conservation. Over the 10 years of the project, we have trained many new scientists at all levels and generated key resources for the public, teachers, and scientific researchers.

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