plant genetic resources | Ag Data Commons

Data from: Plant strategies for maximizing growth during drought and drought recovery in Solanum melongena L. (eggplant)

This data represents the collection of physiological and biometric data of above- and below-ground plant traits in four species of Solanum melongena of Philippine origin (PHL 4841, PHL 2778, PHL 2789, and Mara). Half of the plants were subjected to significant water deficit, and half again of those deficit plants were allowed to recover after subsequent watering. This data is suitable to serve as a benchmark for trait values in S. melongena, as well as in studies of trait responses to terminal drought and episodic drought in agricultural settings.

Data from: Genetic Diversity and Population Structure of the USDA Sweetpotato (Ipomoea batatas) Germplasm Collections Using GBSpoly

Population structure and genetic diversity of 417 USDA sweetpotato (*Ipomoea batatas*) accessions originating from 8 broad geographical regions (Africa, Australia, Caribbean, Central America, Far East, North America, Pacific Islands, and South America) were determined using single nucleotide polymorphisms (SNPs) identified with a genotyping-by-sequencing (GBS) protocol, GBSpoly, optimized for highly heterozygous and polyploid species.

html

Genomes To Fields 2016

Phenotypic, genotypic, and environment data for the 2016 field season: The data is stored in [CyVerse](http://datacommons.cyverse.org/browse/iplant/home/shared/commons_repo/curated/GenomesToFields_G2F_2016_Data_Mar_2018).

html

Genomes To Fields 2015

Phenotypic, genotypic, and environment data for the 2015 field season: The data is stored in [CyVerse](http://datacommons.cyverse.org/browse/iplant/home/shared/commons_repo/curated/Carolyn_Lawrence_Dill_G2F_Mar_2017).

html

Genomes To Fields 2014

Phenotypic, genotypic, and environment data for the 2014 field season: The data is stored in [CyVerse](http://datacommons.cyverse.org/browse/iplant/home/shared/commons_repo/curated/Carolyn_Lawrence_Dill_G2F_Nov_2016_V.3).

html

Genomes To Fields (G2F) Inbred Ear Imaging Data 2017

A subset of ~30 inbreds were evaluated in 2014 and 2015 to develop an image based ear phenotyping tool. The data is stored in [CyVerse](http://datacommons.cyverse.org/browse/iplant/home/shared/commons_repo/curated/Edgar_Spalding_G2F_Inbred_Ear_Imaging_June_2017).

html

maize-GAMER Annotations for maize B73 RefGen_V4 Zm00001d.2

This dataset from maize-GAMER is a new high-coverage and reproducible functional annotation of maize protein coding genes based on Gene Ontology (GO) term assignments that covers all genes in the B73 RefGen_V4 Zm00001d.2.

html

Maize-GAMER: Maize B73 RefGen_v3 5b+

This dataset from maize-GAMER is a new high-coverage and reproducible functional annotation of maize (*Zea mays*) protein coding genes based on Gene Ontology (GO) term assignments that covers all genes in the B73 RefGen_v3 5b+ set. Data are compressed gzip (.gz) files.

html

The GRIN-Global Project

GRIN-Global is an ongoing international collaborative project to develop shared and open-source applications that help manage plant germplasm collections.

html

Maize-GAMER: GO Annotations, Methods, Evaluation and Review

maize-GAMER is a collaborative project to improve the status of gene functional annotation in maize (*Zea mays*). The project has three main areas of focus, namely * Design a pipeline for the functional annotation of maize genes. * Use manually curated test data to evaluate the annotations and generate a best subset of annotations for use * Design a user friendly review system for the community to provide feedback and endorsements of the annotations

html