proteins | Ag Data Commons

Initial set of gene ontology (GO) terms for the D v virgifera GCF_003013835.1 RefSeq protein models

Gene ontologies generated using GOanna with a standard pipeline (https://agbase-docs.readthedocs.io/en/latest/goanna/using_goanna_cmd.html; default settings) with queries against the invertebrate subsection of the UniProt database.

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Functional annotation for 15 diverse arthropod genomes

We present the annotation results of 15 arthropod proteomes using an open source, open access and containerized pipeline for genome-scale functional annotation of insect proteomes and apply it to a diverse range of arthropod species.

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Bradysia coprophila genome annotations Bcop_v1.0

This dataset presents the Bradysia coprophila genome annotations Bcop_v1.0. It will be used as a starting point to manually improve annotations.

Data from: Genome analyses of fungal pathogens Neonectria faginata and Neonectria coccinea

Protein predictions using Augustus web for the fungi Neonectria coccinea and N. faginata, as well as protein prediction of closely related species N. ditissima, and Corinectria fuckeliana.

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De novo transcriptome assembly of Schizaphis gramium Biotype I feeding on wheat

Transcriptome was generated from pooled adult aphids that were fed on wheat plants containing the Dn4 and DN7 resistance gene as well as Yuma plants containing no resistant genes (Dn0). The assembly was generated using Trinity. All assembled transcripts, including those that were not predicted to encode ORFs, are included along with their corresponding functional annotations from Trinotate.

Genes of viral origin in the Cotesia vestalis genome

Cotesia vestalis (Haliday) is a braconid wasp (subfamily Microgastrinae) and biological control agent of the diamondback moth Plutella xylostella. C. vestalis belongs to a group of wasps known as the "microgastroid complex" that produces bracoviruses. Genes encoding bracovirus proteins are integrated into the wasp genome. Screens for viral genes in the wasp genome revealed genes of viral origin from a second type of virus. Manual annotation of viral genes and phylogenetic analysis revealed that C. vestalis has independently acquired integrated endogenous virus elements related to the Leptopilina boulardi filamentous virus.

Data from: Identification and functional characterization of immunity-suppressing, candidate effector proteins in the parasitic weed Phelipanche aegyptiaca

All source data from the referenced paper (Figures 1b and Table 1). 22 Excel files of data from each experimental block of the reactive oxygen species assay, 1 Excel file of the combined data from the bacterial growth enhancement assay, 1 Excel file of the RT-qPCR data.

Oncopeltus fasciatus hybrid genome assembly 1.0

The milkweed bug, *Oncopeltus fasciatus*, was sequenced as part of the i5k pilot project from Baylor College of Medicine (Illumina data). To augment those resources, we present here a hybrid genome assembly with low coverage PacBio data, assembled with PBJelly: the *Oncopeltus fasciatus* Hybrid Genome Assembly v1.0.

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Data from: Whole-genome sequence data and analysis of a Staphylococcus aureus strain SJTUF_J27 isolated from seaweed

The complete genome sequence data of *S. aureus* SJTUF_J27 isolated from seaweed in China is reported.

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Genes of viral origin in the Microplitis demolitor genome

*Microplitis demolitor* (Hymenoptera: Braconidae) is a parasitoid used as a biological control agent to control larval-stage Lepidoptera and serves as a model for studying the function and evolution of symbiotic viruses in the genus Bracovirus. Using RNA-Seq data for this species and manual annotation of genes of viral origin, we annotated a high-quality gene set including 171 virus-derived protein-coding genes.