Ag Data Commons migration begins October 18, 2023
The Ag Data Commons is migrating to a new platform – an institutional portal on Figshare. Starting October 18 the current system will be available for search and download only. Submissions will resume after the launch of our portal on Figshare in November. Stay tuned for details!
Data from: Genome wide association study of thyroid hormone levels following challenge with porcine reproductive and respiratory syndrome virus
Porcine reproductive and respiratory syndrome virus (PRRSV) causes respiratory disease in piglets and reproductive disease in sows. Piglet and fetal serum thyroid hormone (i.e., T3 and T4) levels decrease rapidly in response to PRRSV infection. Our objective was to estimate genetic parameters and identify quantitative trait loci (QTL) for absolute T3 and/or T4 levels of piglets and fetuses challenged with PRRSV.
- 2x excel
Data from: Mapping the Quantitative Field Resistance to Stripe Rust in a Hard Winter Wheat Population ‘Overley’ × ‘Overland’
This study was conducted to identify quantitative trait loci (QTL) associated with field resistance to stripe rust, also known as yellow rust (YR), in hard winter wheat. Stripe rust infection type and severity were rated in recombinant inbred lines (RILs, n=204) derived from a cross between hard red winter wheat cultivars ‘Overley’ and ‘Overland’ in replicated field trials in the Great Plains and Pacific Northwest.
Data from: Genetic mapping and QTL analysis for peanut smut resistance
This collection contains supplementary information for the manuscript “Genetic mapping and QTL analysis for peanut smut resistance”, which reports the genetic map and quantitative trait loci associated with resistance to peanut smut, a disease caused by the fungus *Thecaphora frezii*. The information includes genotyping data of a 103 recombinant inbred line (RIL) population {susceptible *Arachis hypogaea* subsp. *hypogaea* × resistant synthetic amphidiploid [(*A. correntina* × *A. cardenasii*) × *A. batizocoi*]4×} and parental lines, generated with the Axiom_Arachis2 SNP array.
Data from: A deletion mutation in TaHRC confers Fhb1 resistance to Fusarium head blight in wheat
Fusarium head blight (FHB), which is mainly caused by *Fusarium graminearum*, is a destructive wheat disease that threatens global wheat production. *Fhb1*, a quantitative trait locus discovered in Chinese germplasm, provides the most stable and the largest effect on FHB resistance in wheat. Here we show that *TaHRC*, a gene that encodes a putative histidine-rich calcium-binding protein, is the key determinant of *Fhb1*-mediated resistance to FHB.
Data from: Genome of ‘Charleston Gray’, the principal American watermelon cultivar, and genetic characterization of 1,365 accessions in the U.S. National Plant Germplasm System watermelon collection
A high‐quality genome sequence of a principal American dessert watermelon cultivar ‘Charleston Gray’ is reported, to complement the existing reference genome from ‘97103’, an East Asian cultivar.
CottonGen Sequence Retrieval
Sequence Retrieval allows users to download nucleotide and protein sequences including chromosomes, scaffolds, genes, mRNAs, transcript coding sequences, protein, reftrans contigs and unigene contigs. For the sequences aligned to larger sequences, such as genes, mRNAs and transcript coding sequences, a numeric value specifying the number of upstream bases and downstream bases can be entered.