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AgBase

    [AgBase](https://agbase.arizona.edu/index.html) Version 2.0 is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products including gene ontology annotations. Its long-term goal is to serve the needs of the agricultural research communities by facilitating post-genome biology for agriculture researchers and for those researchers primarily using agricultural species as biomedical models. AgBase uses controlled vocabularies developed by the Gene Ontology (GO) Consortium to describe molecular function, biological process, and cellular component for genes and gene products in agricultural species.

    Uniform Soybean Tests, Northern Region

      The Uniform Soybean Tests, Northern Region, in place since 1941, evaluate yield, disease resistance, and quality traits of public breeding lines from northern states of the USA and Canadian provinces. The annual reports which compile the test results (PDF format) are available, and new reports are added annually.

      Complete Data and Analysis for: Fungicide Effectiveness on Soybean Rust in the Southeastern United States 2004-2014: A Meta-Analysis

        Soybean rust is a concern to soybean growers and management of soybean rust primarily depends on disease scouting and the timely use of fungicides. The goal of this study was to evaluate the efficacy of fungicide-use through a quantitative meta-analysis of data compiled from published and unpublished soybean fungicide trials across the southern United States from 2004 to 2014. The data included in this repository includes the complete dataset as a comma-separated-value file and all Program R code necessary to replicate the data processing, analysis, and graphing.

        Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance in Glycine soja, the Wild Progenitor of Cultivated Soybeans

          The present study explores an ex situ conservation collection, the USDA germplasm collection, genotyped at 32,416 SNPs, to identify population structure and test for associations with bioclimatic and biophysical variables in Glycine soja, the wild progenitor of Glycine max (soybean). Candidate loci were detected that putatively contribute to adaptation to abiotic stresses.

          Data from: Draft genome sequence of Xylaria sp., the causal agent of taproot decline of soybean in the southern United States

            The draft genome of *Xylaria* sp. isolate MSU_SB201401, causal agent of taproot decline of soybean in the southern U.S., is presented here. The genome assembly was 56.7 Mb in size with an L50 of 246. A total of 10,880 putative protein-encoding genes were predicted, including 647 genes encoding carbohydrate-active enzymes and 1053 genes encoding secreted proteins.

            BAR- The Bio-Analytic Resource for Plant Biology

              BAR is a collection of web-based, user-friendly tools for exploring, visualizing, and analyzing large datasets from plants. Supported are expression data, Next-Gen sequence data, protein-protein interactions, polymorphisms / conservation, and protein 3-D structures.