tissues | Ag Data Commons

Data from: Benzoxazinoids in roots and shoots of cereal rye (Secale cereale) and their fates in soil after cover crop termination

This research characterizes changes in concentrations of BX compounds in shoots, roots, and soil at three growth stages (GS) of cereal rye (Secale cereale L.), and their degradation over time following termination. Includes data and R code.

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Manduca sexta Official Gene Set v2.2

This dataset presents the *Manduca sexta* Official Gene Set (OGS) v2.2. It is derived from Official Gene Sets OGSv2.0 and OGSv2.1.

Data from: Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations

The first complete global landscape of regulatory elements in cattle is presented and the dynamics of chromatin states in rumen epithelial cells induced by the rumen developmental regulator - butyrate- are explored.

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Data from: Overexpression of a Modified Plant Thionin Enhances Disease Resistance to Citrus Canker and Huanglongbing (HLB)

This study characterizes endogenous citrus thionins and investigates their expression in different citrus tissues. Since no HLB-resistant citrus cultivars have been identified, development of citrus resistant to both HLB and citrus canker through overexpression of a modified plant thionin is attempted.

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Manduca sexta Official Gene Set v2.0

This dataset presents the Manduca sexta Official Gene Set (OGS) v2.0. It is predicted from genome assembly Msex_1.0 (GCA_000262585.1).

Data from: Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics

Non-targeted metabolomics, combined with transcriptomics via a NimbleGen array platform, are used to study how gene expression and metabolite profiles can be linked to generate a more detailed mechanistic appreciation of the cellular response to both desiccation and rehydration in the C4 resurrection grass, *Sporobolus stapfianus* Gandoger, as a member of a group of important forage grasses.

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Data from: Knockdown of a metathoracic scent gland desaturase enhances the production of (E)‐4‐oxo‐2‐hexenal and suppresses female sexual attractiveness in the plant bug Adelphocoris suturalis

This study isolates and characterizes two new desaturase‐like genes, termed Asutdes1 and Asutdes2, from Adelphocoris suturalis, an important agricultural pest in China.

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A consistent and predictable commercial broiler chicken bacterial microbiome in antibiotic-free production displays strong correlations with performance

This dataset includes forward and reverse raw sequencing reads for 2,309 broiler chicken gut, respiratory, and litter samples surveyed using 16S amplicon profiling.

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Data from: The testes transcriptome of the New World Screwworm, Cochliomyia hominivorax

This study reports the assembly of 4149 transcripts (≥200 nt) from testes dissected from New World Screwworm *Cochliomyia hominivorax* males obtained from the J06 strain used in the screwworm production plant in Pacora, Panama.

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Plant Expression Database

[NOTE: PLEXdb is no longer available online. Oct 2019.] PLEXdb (Plant Expression Database) is a unified gene expression resource for plants and plant pathogens. PLEXdb is a genotype to phenotype, hypothesis building information warehouse, leveraging highly parallel expression data with seamless portals to related genetic, physical, and pathway data.

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