Maize Genetics Cooperation Stock Center Catalog of Stocks

The Maize Genetics Cooperation Stock Center is operated by USDA/ARS, located at the University of Illinois, Urbana/Champaign, and integrated with the National Plant Germplasm System (NPGS). The center serves the maize research community by collecting, maintaining and distributing seeds of maize genetic stocks, and providing information about maize stocks and the mutations they carry through the Maize Genetics and Genomics Database (MaizeGDB).

Genomics and Genetics

Maize-GAMER: GO Annotations, Methods, Evaluation and Review

maize-GAMER is a collaborative project to improve the status of gene functional annotation in maize (Zea mays). The project has three main areas of focus, namely

  • Design a pipeline for the functional annotation of maize genes.
  • Use manually curated test data to evaluate the annotations and generate a best subset of annotations for use
  • Design a user friendly review system for the community to provide feedback and endorsements of the annotations
Plants and Crops

Data from: Datasets for transcriptomic analyses of maize leaves in response to Asian corn borer feeding and/or jasmonic acid

Corn's (Zea mays) response to initial insect damage involves a variety of changes to the levels of defensive enzymes, toxins, and communicative volatiles. Such a dramatic change secondary metabolism necessitates the regulation of gene expression at the transcript level. This Data In Brief paper summarizes the datasets of the transcriptome of corn plants in response to corn stalk borers (Ostrinia furnacalis) and/or methyl jasmonate (MeJA). Altogether, 39,636 genes were found to be differentially expressed.

Genomics and Genetics

MaizeGDB

MaizeGDB is a community-oriented, long-term, federally funded informatics service to researchers focused on the crop plant and model organism Zea mays. Genomic, genetic, sequence, germplasm, gene product, metabolic pathways, functional characterization, literature reference, diversity, and expression are among the datatypes stored at MaizeGDB. At the project's website are custom interfaces enabling researchers to browse data and to seek out specific information matching explicit search criteria. First released in 1991 with the name MaizeDB, the Maize Genetics and Genomics Database, now MaizeGDB (since 2003), is funded, developed, and hosted by the USDA-ARS located at Ames, Iowa.

Genomics and Genetics

Low-Disturbance Manure Incorporation

The LDMI experiment (Low-Disturbance Manure Incorporation) was designed to evaluate nutrient losses with conventional and improved liquid dairy manure management practices in a corn silage (Zea mays) / rye cover-crop (Secale cereale) system. The improved manure management treatments were designed to incorporate manure while maintaining crop residue for erosion control. Field observations included greenhouse gas (GHG) fluxes from soil, soil nutrient concentrations, crop growth and harvest biomass and nutrient content, as well as monitoring of soil physical and chemical properties. Observations from LDMI have been used for parameterization and validation of computer simulation models of GHG emissions from dairy farms (Gaillard et al., submitted). The LDMI experiment was performed as part of the Dairy CAP.

Dairy CAP logo

Feedstock Readiness Level Evaluations Summary Table v3.0

The table in this dataset collates the results of the FSRL evaluations listed under the Farm2Fly Ag Data Commons datasets to enable users to quickly identify, review, and compare available evaluations. Feedstock readiness level evaluations are performed for a specific feedstock-conversion process combination and for a particular region. FSRL evaluations complement evaluations of Fuel Readiness Level (FRL) and environmental progress.

Farm2fly Program

Manure application methods for alfalfa-grass

The MAMA experiment (Manure Application Methods for Alfalfa-Grass), from the USDA-ARS research station in Marshfield, WI was designed to evaluate nutrient and pathogen losses with conventional and improved liquid dairy manure management practices for alfalfa-grass production. Observations from MAMA have also been used for parameterization and validation of computer simulation models of greenhouse gas (GHG) emissions from dairy farms.

Dairy CAP logo

Feedstock Readiness Level Evaluations Summary Table v2.0

The table in this dataset collates the results of the FSRL evaluations listed under the Farm2Fly Ag Data Commons datasets to enable users to quickly identify, review, and compare available evaluations. Feedstock readiness level evaluations are performed for a specific feedstock-conversion process combination and for a particular region. FSRL evaluations complement evaluations of Fuel Readiness Level (FRL) and environmental progress.

Farm2fly Program

Feedstock Readiness Level (FSRL) evaluation: Zea mays (corn stover), Alcohol-to-Jet, Central East, Mar. 2017

Feedstock readiness level evaluations are performed for a specific feedstock-conversion process combination and for a particular region. FSRL evaluations complement evaluations of Fuel Readiness Level (FRL) and environmental progress. The data from this evaluation, compiled in March 2017, assesses the maturity of Zea mays (corn stover) as a feedstock for the Alcohol-to-Jet conversion process in the United States Central East region.

Farm2fly Program