i5k Workspace

About the i5k Workspace@NAL

The i5k Workspace (https://i5k.nal.usda.gov) is an inclusive genome portal for any arthropod genome project that would like to make use of our resources. We provide download services, BLAST, the JBrowse genome browser, and the Apollo manual curation service. Over 50 arthropod genomes are now part of the i5k Workspace, and users are encouraged to browse the genomes that we host, and contribute to the curation of each genome. For more information about the i5k Workspace, you can read our paper on the i5k Workspace, view our posters and talks, and find our software projects on github. The Ag Data Commons is now hosting a growing number of i5k Workspace datasets.

About the i5k initiative

The i5k initiative is a transformative project that aims to sequence and analyze the genomes of 5,000 arthropod species. The National Agricultural Library has partnered with the i5k initiative to create the i5k Workspace@NAL, which serves any ‘orphaned’ arthropod genome project's hosting needs. For more information about the i5k initiative, read the paper and visit the website.

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i5k Datasets

23 datasets

Agrilus planipennis genome annotations v0.5.3

This dataset presents the Agrilus planipennis gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Agrilus planipennis genome assembly 1.0. This dataset is free for all use.

insects 5000 program

Blattella germanica genome annotations v0.5.3

This dataset presents the Blattella germanica gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Blattella germanica genome assembly 1.0. This dataset is free for all use.

insects 5000 program

Catajapyx aquilonaris genome annotations v0.5.3

This dataset presents the Catajapyx aquilonaris gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Catajapyx aquilonaris genome assembly 1.0.This dataset is free for all use.

insects 5000 program

Centruroides sculpturatus genome annotations v0.5.3

This dataset presents the Centruroides sculpturatus gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Centruroides sculpturatus genome assembly 1.0. This dataset is free for all use.

insects 5000 program

Ceratitis capitata genome annotations v0.5.3

This dataset presents the Ceratitis capitata gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Ceratitis capitata genome assembly 1.1.This dataset is free for all use.

insects 5000 program

Ephemera danica genome annotations v0.5.3

This dataset presents the Ephemera danica gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Ephemera danica genome assembly 1.0. This dataset is free for all use.

insects 5000 program

Ladona fulva genome annotations v0.5.3

This dataset presents the Ladona fulva gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Ladona fulva genome assembly 1.0. This dataset is free for all use.

insects 5000 program

Limnephilus lunatus genome annotations v0.5.3

This dataset presents the Limnephilus lunatus gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Limnephilus lunatus genome assembly 1.0. This dataset is free for all use.

insects 5000 program

Loxosceles reclusa genome annotations v0.5.3

This dataset presents the Loxosceles reclusa gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Loxosceles reclusa genome assembly 1.0. This dataset is free for all use.

insects 5000 program