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AgBase

    [AgBase](https://agbase.arizona.edu/index.html) Version 2.0 is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products including gene ontology annotations. Its long-term goal is to serve the needs of the agricultural research communities by facilitating post-genome biology for agriculture researchers and for those researchers primarily using agricultural species as biomedical models. AgBase uses controlled vocabularies developed by the Gene Ontology (GO) Consortium to describe molecular function, biological process, and cellular component for genes and gene products in agricultural species.

    Data from: The assembled transcriptome of the adult horn fly, Haematobia irritans

      To better understand the adult horn fly, *Haematobia irritans irritans*, and the development of resistance in natural populations, an Illumina paired-end read HiSeq and GAII approach was used to determine the transcriptomes of untreated control adult females, untreated control adult males, permethrin-treated surviving adult males and permethrin + piperonyl butoxide-treated killed adult males from a Louisiana population of horn flies with a moderate level of pyrethroid resistance.

      Pacific Northwest Region (Region 6) Geospatial Data

        The Pacific Northwest Region (Region 6) of the US Forest Service contains 17 National Forests, two National Scenic Areas, a National Grassland, and two National Volcanic Monuments, all within the States of Oregon and Washington. These national forests provide timber for people, forage for cattle and wildlife, habitat for fish, plants, and animals, and some of the finest recreation lands in the country. This database contains links to the Pacific Northwest Forests with GIS data currently available online.

        Rocky Mountain Research Station Air, Water, & Aquatic Environments Program

          The Air, Water, and Aquatic Environments (AWAE) research program is one of eight Science Program areas within the Rocky Mountain Research Station (RMRS). Our science develops core knowledge, methods, and technologies that enable effective watershed management in forests and grasslands, sustain biodiversity, and maintain healthy watershed conditions.

          Data from: Transcriptomes of bovine ovarian follicular and luteal cells

            Gene 1.0 ST Array RNA expression analysis was performed on four somatic ovarian cell types: the granulosa cells (GCs) and theca cells (TCs) of the dominant follicle and the large luteal cells (LLCs) and small luteal cells (SLCs) of the corpus luteum. The normalized linear microarray data was deposited to the NCBI GEO repository (GSE83524). Subsequent ANOVA determined genes that were enriched (≥2 fold more) or decreased (≤−2 fold less) in one cell type compared to all three other cell types, and these analyzed and filtered datasets are presented as tables. Genes that were shared in enriched expression in both follicular cell types (GCs and TCs) or in both luteal cells types (LLCs and SLCs) are also reported.

            Data from: Data and analyses of woody restoration planting survival and growth as a function of wild ungulate herbivory

              The data and analyses presented include: (1) planting density, survival and growth (two years post restoration) of riparian plantings along an ~11 km stream reach in northeastern Oregon as a function of herbivory treatment (protected/not protected from wild ungulate herbivory), habitat type, and planting species; and (2) abundance and height distributions of naturally occurring deciduous woody species along the restored stream reach two years post restoration.

              Animal Trait Correlation Database (CorrDB)

                A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. In the genomics era, while gene expression, genetic association, and network analysis provide unprecedented means to decode the genetic basis of complex phenotypes, it is important to recognize the possible effects genetic progress in one trait can have on other traits. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies.

                The Animal Quantitative Trait Loci Database (Animal QTLdb)

                  The Animal Quantitative Trait Loci (QTL) Database (Animal QTLdb) strives to collect all publicly available trait mapping data, i.e. QTL (phenotype/expression, eQTL), candidate gene and association data (GWAS), and copy number variations (CNV) mapped to livestock animal genomes, in order to facilitate locating and comparing discoveries within and between species. New data and database tools are continually developed to align various trait mapping data to map-based genome features such as annotated genes.