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BAR- The Bio-Analytic Resource for Plant Biology

    BAR is a collection of web-based, user-friendly tools for exploring, visualizing, and analyzing large datasets from plants. Supported are expression data, Next-Gen sequence data, protein-protein interactions, polymorphisms / conservation, and protein 3-D structures.

    GenSAS v5.1: A Web-Based Platform for Structural and Functional Annotation and Curation of Genomes

      The Genome Sequence Annotation Server (GenSAS) is an online platform that provides a pipeline for whole genome structural and functional annotation. Users can upload genome sequences and select from a variety of tools for repeat masking, prediction of gene models and other structural features as well as functional annotation tools. GenSAS integrates with JBrowse and Apollo to provide visualization and editing.

      RCA Report - Interactive Data Viewer

        This site supports the Soil and Water Resources Conservation Act (RCA) by providing data from a variety of sources, including data on the status and trends of natural resources, conservation efforts (funding and conservation practices applied), and the agricultural sector. Reports can be created at the State, Regional, or National level.

        iSnobal

          iSnobal is a physically-based distributed snowmelt model. A coupled energy and mass-balance model iSnobal is used to simulate the development and melting of the seasonal snowcover.

          ARS Microbial Genomic Sequence Database Server

            This database server is supported in fulfilment of the research mission of the Mycotoxin Prevention and Applied Microbiology Research Unit at the National Center for Agricultural Utilization Research in Peoria, Illinois. The linked website provides access to gene sequence databases for various groups of microorganisms, such as Streptomyces species or Aspergillus species and their relatives, that are the product of ARS research programs. The sequence databases are organized in the BIGSdb (Bacterial Isolate Genomic Sequence Database) software package developed by Keith Jolley and Martin Maiden at Oxford University.

            i5K Workspace@NAL

              The i5k Workspace @ NAL is a platform for communities around ‘orphaned’ arthropod genome projects to access, visualize, curate and disseminate their data.

              Legume (Fabaceae) Fruits and Seeds Version 2

                This is an identification key to genera for seeds and fruits of the legume family. The coverage is world wide, and for each genus there are descriptions of the seeds and fruits, distribution data, and images. The interactive software system INTKEY is used for accessing the data and images. The key can be used for identifying to genus unknown legume samples or for querying the data and images for legume genera, and is designed for seed analysts, technicians, port inspectors, weed scientists, ecologists, botanists, and researchers who need to identify isolated legume fruits and seeds.

                Unit process data for bio-jet fuel production from poplar biomass via bioconversion at a biorefinery

                  A partial Life Cycle Assessment (LCA) is conducted to investigate the life cycle impacts of a biorefinery designed to convert poplar tree chips into jet fuel via fermentation and subsequent hydrogenation. The goal of producing jet fuel from Populus (poplar) trees (bio-jet) is to create an alternative to petroleum based jet fuel (petro-jet). Currently no jet fuel producing biorefineries are in commercial operation and the results of this LCA will be used to assess a potential environmental impact that could result from scaling up the proposed system. Work is part of the Advanced Hardwood Biofuels Northwest project.

                  Agricultural Conservation Planning Framework (ACPF) Toolbox

                    The Agricultural Conservation Planning Framework (ACPF) Toolbox software includes tools to process the LiDAR-based digital elevation models for hydrologic analysis, which then allows a series of prioritization, riparian classification, and conservation-practice placement tools to be used. These toolsets identify agricultural fields most prone to deliver runoff directly to streams, map and classify riparian zones to inform whole-watershed riparian corridor management, and estimate the extent of tile drainage in the watershed. The software maps out suites of locations appropriate to install each of several types of conservation practices. These practice-placement opportunities are mapped for practices including controlled drainage, grassed waterways, water and sediment control basins, and nutrient removal wetlands. Rather than making any recommendations, ACPF provides an inventory of watershed assessment data and conservation placement opportunities across a watershed, in order to inform local watershed planning.