U.S. flag

An official website of the United States government

myPhyloDB

    myPhyloDB is an open-source software package aimed at developing a user-friendly web-interface for accessing and analyzing all of your laboratory's microbial ecology data (currently supported project types: soil, air, water, microbial, and human-associated). The storage and handling capabilities of myPhyloDB archives users' raw sequencing files, and allows for easy selection of any combination of projects/samples from all of your projects using the built-in SQL database. The data processing capabilities of myPhyloDB are also flexible enough to allow the upload, storage, and analysis of pre-processed data or raw (454 or Illumina) data files using the built-in versions of Mothur and R.

    The GRIN-Global Project

      GRIN-Global (GG) is a database application that enables genebanks to store and manage information associated with plant genetic resources (germplasm) and deliver that information globally. The GRIN-Global project's mission is to provide a scalable version of the Germplasm Resource Information Network (GRIN) suitable for use by any interested genebank in the world.

      Maize Genetics Cooperation Stock Center Catalog of Stocks

        The Maize Genetics Cooperation Stock Center is operated by USDA/ARS, located at the University of Illinois, Urbana/Champaign, and integrated with the National Plant Germplasm System (NPGS). The center serves the maize research community by collecting, maintaining and distributing seeds of maize genetic stocks, and providing information about maize stocks and the mutations they carry through the Maize Genetics and Genomics Database (MaizeGDB).

        Data from: Datasets for transcriptomic analyses of maize leaves in response to Asian corn borer feeding and/or jasmonic acid

          Corn's (*Zea mays*) response to initial insect damage involves a variety of changes to the levels of defensive enzymes, toxins, and communicative volatiles. Such a dramatic change secondary metabolism necessitates the regulation of gene expression at the transcript level. This *Data In Brief* paper summarizes the datasets of the transcriptome of corn plants in response to corn stalk borers (*Ostrinia furnacalis*) and/or methyl jasmonate (MeJA). Altogether, 39,636 genes were found to be differentially expressed.

          National Plant Germplasm System

            The U.S. National Plant Germplasm System (NPGS) is collaborative effort to safeguard the genetic diversity of agriculturally important plants.

            National Invertebrate Genetic Resources

              Insects impact American agriculture both as destructive and beneficial organisms. Insect pests, parasites, predators, products, and pollinators are all economically important. It is critically important to distinguish between different species, races, stocks, strains, biotypes, and other genetic entities and to document their different interactions with agriculture and the environment. The goals of the National Invertebrate Genetic Resources Program include: 1. Preservation of reference specimens 2. Maintenance of genetically important germplasm 3. Documentation of specific insect stocks 4. Management of databases 5. Distribution of material to researchers and breeders.

              ARS Microbial Genomic Sequence Database Server

                This database server is supported in fulfilment of the research mission of the Mycotoxin Prevention and Applied Microbiology Research Unit at the National Center for Agricultural Utilization Research in Peoria, Illinois. The linked website provides access to gene sequence databases for various groups of microorganisms, such as Streptomyces species or Aspergillus species and their relatives, that are the product of ARS research programs. The sequence databases are organized in the BIGSdb (Bacterial Isolate Genomic Sequence Database) software package developed by Keith Jolley and Martin Maiden at Oxford University.

                Gramene

                  Gramene is a curated, open-source, integrated data resource for comparative functional genomics in crops and model plant species.

                  Ricebase

                    Ricebase ([https://ricebase.org](https://ricebase.org)) is an integrative genomic database for rice (Oryza sativa) with an emphasis on combining datasets in a way that maintains the key links between past and current genetic studies. Ricebase includes DNA sequence data, gene annotations, nucleotide variation data and molecular marker fragment size data.

                    Cassavabase

                      The Next Generation Cassava Breeding (NEXTGEN Cassava) project aims to significantly increase the rate of genetic improvement in cassava breeding and unlock the full potential of cassava, a staple crop central to food security and livelihoods across Africa. The project will implement and empirically test a new breeding method known as Genomic Selection that relies on statistical modeling to predict cassava performance before field-testing, and dramatically accelerates the breeding cycle.