genetics | Ag Data Commons

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The Ag Data Commons is migrating to a new institutional portal on Figshare. The current system is available for search and download only. The new platform is open for submission with assistance from Ag Data Commons curators. Please contact NAL-ADC-Curator@usda.gov, if you need to publish or update your datasets.

Genomics of IncA/C plasmids

National Center for Biotechnology Information

Characterization of the global transcriptome of bacterial strains carrying IncA/C plasmids, mapping of fitness compensatory mutations in strains carrying IncA/C plasmids and targeted pull-downs of DNA associated with proteins of interest.

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Sequence of PCR amplicon created using bombicar primers for partial small ribosomal subunit of Nosema bombi

National Center for Biotechnology Information

The primary purpose of the project was to determine the prevalence of Nosema bombi infections in the bumble bee communities of Northern Arizona.

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The Populus ARBORKNOX1 homeobox transcription factor regulates woody growth through binding to evolutionarily conserved target genes of diverse function

National Center for Biotechnology Information

The Populus ARBORKNOX1 homeobox transcription factor regulates woody growth through binding to evolutionarily conserved target genes of diverse function

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Populus ChIP-seq and RNA-seq

National Center for Biotechnology Information

Transcriptional network study of Populus stem secodary growth

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Mitochondrial Genome Sequences Illuminate Maternal Lineages of Conservation Concern in a Rare Carnivore

National Center for Biotechnology Information

Science-based wildlife management relies on genetic information to infer population connectivity and identify conservation units.

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Multiplexed Microsatellite Recovery Using Massively Parallel Sequencing

National Center for Biotechnology Information

Conservation and management of natural populations requires accurate and inexpensive genotyping methods.

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Lachancea kluyveri Copy number analysis

National Center for Biotechnology Information

Use a copy number approach to determine replication profile of lachancea kluyveri genome.

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Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

National Center for Biotechnology Information

Alfalfa, [Medicago sativa (L.) sativa], a widely-grown perennial forage has potential for development as a cellulosic ethanol feedstock. The application of genomic approaches would advance development of alfalfa as a cellulosic feedstock.

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The complete genome sequence and analysis of the human pathogen Arcobacter butzleri.

National Center for Biotechnology Information

Background: The human pathogen Arcobacter butzleri is a member of the epsilon subdivision of the Proteobacteria and a close taxonomic relative of other established pathogens, such as Campylobacter jejuni and Helicobacter pylori.

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Thielavia terrestris NRRL 8126 RefSeq Genome

National Center for Biotechnology Information

The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA32847). Annotation on the RefSeq genomic records is propagated from the INSDC submission.

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