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The Ag Data Commons is migrating

The Ag Data Commons is migrating to a new institutional portal on Figshare. The current system is available for search and download only. The new platform is open for submission with assistance from Ag Data Commons curators. Please contact NAL-ADC-Curator@usda.gov, if you need to publish or update your datasets.

Genetic linkage map (isolates IPO323 x IPO94269)

National Center for Biotechnology Information
    Plant Research International and USDA - Agricultural Research Service generated a Mycosphaerella graminicola genetic linkage map by crossing the two field isolates IPO323 and IPO94269.

    Kluyveromyces lactis NRRL Y-1140 RefSeq Genome

    National Center for Biotechnology Information
      The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA13835). Annotation on the RefSeq genomic records is propagated from the INSDC submission.

      Gibberella zeae

      National Center for Biotechnology Information
        The genetic map of Gibberella zeae lineage 7 was constructed using a cross between the type strain PH-1 (NRRL 31084) and a strain from Minnesota, 00-676 (NRRL 34097).

        Vicia villosa seed physical dormancy dataset from 2017-2019

          Material for physical dormancy analyses derived from a *Vicia villosa* breeding program. A detailed description of nursery design, management, and selection methods are provided in https://doi.org/10.2135/cropsci2018.09.0569. Seeds were collected and analyzed for physical dormancy from a total of 1611 individual plants.

          Data from: The Structure and Catalytic Mechanism of Sorghum bicolor Caffeoyl-CoA O-Methyltransferase

            Caffeoyl-coenzyme A 3-O-methyltransferase (CCoAOMT) is an S-adenosyl methionine (SAM)-dependent O-methyltransferase responsible for methylation of the *meta*-hydroxyl group of caffeoyl-coenzyme A (CoA) on the pathway to monolignols, with their ring methoxylation status characteristic of guaiacyl or syringyl units in lignin. In order to better understand the unique class of type 2 O-methyltransferases from monocots, we have characterized CCoAOMT from sorghum (*Sorghum bicolor*; SbCCoAOMT), including the SAM binary complex crystal structure and steady-state enzyme kinetics.

            Divergence in host specificity and genetics among populations of Aphelinus certus

              These are data on variation in host specificity and genetics among 16 populations of an aphid parasitoid, *Aphelinus certus*, 15 from Asia and one from North America. Host range was the same for all the parasitoid populations, but levels of parasitism varied among aphid species, suggesting adaptation to locally abundant aphids. Differences in host specificity did not correlate with geographical distances among parasitoid populations, suggesting that local adaption is mosaic rather than clinal, with a spatial scale of less than 50 kilometers. Analysis of reduced representation libraries for each population showed genetic differentiation among them. Differences in host specificity correlated with genetic distances among the parasitoid populations.

              Risk prioritization of pork supply movements during an FMD outbreak in the US - Data and Materials

                This study recruited experts from production, harvest, retail, and allied pork industries to assess 30 common pork supply movements for their industry criticality. Movements spanned five categories: equipment, live animal production, genetics, harvest, and people. Experts were recruited via email to the American Association of Swine Veterinarians (AASV) mailing list and their assessments were collected via an online survey. The Data.csv file contains the raw survey responses.