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Data from: Use of long-read sequencing simulators to assess real-world applications for food safety

    The goal of this project was to use NanoSim-H software to simulate Oxford Nanopore sequencing reads to assess the feasibility of sequencing-based foodborne pathogen detection and guide experimental design. Sequencing reads were simulated for STEC, *L. monocytogenes*, and a 1:1 combination of STEC and *Bos taurus* genomes using NanoSim-H. This dataset includes all of the simulated reads generated by the project in fasta format.

    Data from: Metagenomes and Metagenome-Assembled Genomes from Ex Vivo Fecal Incubations of Six Unique Donors

      This is a dataset consisting of donor-specific collections of 78 metagenomes (13 / donor) and 143 metagenome-assembled genomes (MAGs) representing the gut microbiomes of six healthy adult human donors. Raw sequencing data and MAG sequence data will be available in NCBI under BioProject accession PRJNA961974. Spreadsheets attached to this dataset include individual accession numbers and sequencing depth for the raw data; and assembly and NCBI accession numbers, binning information, quality metrics, and taxonomic assignments for the MAGs.