genomics | Ag Data Commons

Plodia interpunctella genome sequencing, alternate pseudohaplotype

National Center for Biotechnology Information

Genome sequencing and alternate assembly of Plodia interpunctella (Indianmeal moth) was conducted by the USDA-ARS Ag100Pest Initiative. This insect is a major pest of grocery stores, flour mills, and pet food stores in the United States.

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Leuconostoc citreum strain:NRRL B-1355 Genome sequencing and assembly

National Center for Biotechnology Information

The goal of this research proposal is to sequence the entire genetic code (genome) of the beneficial bacterial species Leuconostoc citreum B-1355.

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Schistocerca gregaria RefSeq Genome

National Center for Biotechnology Information

Schistocerca gregaria genome reference project

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RNA sequencing study of Phaseolus vulgaris interaction with NAD+ againest Halo Blight

National Center for Biotechnology Information

To further investigate the function of NAD+ in snap bean against halo blight caused by Pseudomonas syringae pv. phaseolicola, we investigated NAD+-induced transcriptomic changes using the Illumina RNA-seq technology.

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Melon fungal resistance in MR-1 x AY population

National Center for Biotechnology Information

Two genome assemblies used to create pangenomic graph and skim-seq data used to genotype population for genetic mapping

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Foot-and-mouth disease virus strain:lineage Sea-97 | cultivar:Serotype A Genome sequencing and assembly

National Center for Biotechnology Information

Short read sequences from to study sub-consensus variant complexity of FMDV in acute and persistent natural infections

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Rubus argutus cultivar:Hillquist Genome sequencing and assembly

National Center for Biotechnology Information

Chromosome-length assembly and annotation of the diploid blackberry germplasm accession Hillquist (R. argutus Link.) along with raw sequence reads used to in the project.

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Thecaphora frezii Genome sequencing and assembly

National Center for Biotechnology Information

Draft genome of Thecaphora frezii

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Helicoverpa zea RefSeq Genome sequencing

National Center for Biotechnology Information

The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA807638). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.

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Helicoverpa zea principal pseudohaplotype genome sequencing

National Center for Biotechnology Information

Helicoverpa zea (corn earworm) genome assembly, ilHelZeax1, principal pseudohaplotype

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