AgBase

AgBase Version 2.0 is a curated, open-source, Web-accessible resource for functional analysis of agricultural plant and animal gene products including gene ontology annotations. Its long-term goal is to serve the needs of the agricultural research communities by facilitating post-genome biology for agriculture researchers and for those researchers primarily using agricultural species as biomedical models. AgBase uses controlled vocabularies developed by the Gene Ontology (GO) Consortium to describe molecular function, biological process, and cellular component for genes and gene products in agricultural species.

Genomics and Genetics

ComBase: A Web Resource for Quantitative and Predictive Food Microbiology

ComBase includes a systematically formatted database of quantified microbial responses to the food environment with more than 60,000 records, and is used for:

  • Informing the design of food safety risk management plans
  • Producing Food Safety Plans and HACCP plans
  • Reducing food waste
  • Assessing microbiological risk in foods
Ag Data Commons

The GRIN-Global Project

GRIN-Global (GG) is a database application that enables genebanks to store and manage information associated with plant genetic resources (germplasm) and deliver that information globally. The GRIN-Global project's mission is to provide a scalable version of the Germplasm Resource Information Network (GRIN) suitable for use by any interested genebank in the world.

Ag Data Commons

ARS Microbial Genomic Sequence Database Server

This database server is supported in fulfilment of the research mission of the Mycotoxin Prevention and Applied Microbiology Research Unit at the National Center for Agricultural Utilization Research in Peoria, Illinois. The linked website provides access to gene sequence databases for various groups of microorganisms, such as Streptomyces species or Aspergillus species and their relatives, that are the product of ARS research programs. The sequence databases are organized in the BIGSdb (Bacterial Isolate Genomic Sequence Database) software package developed by Keith Jolley and Martin Maiden at Oxford University.

Genomics and Genetics

Germplasm Resources Information Network (GRIN)

The Germplasm Resources Information Network (GRIN) web server provides germplasm information about plants, animals, microbes and invertebrates important for food and agricultural production. These include lists of currently registered cultivars, historical seed and varietal catalogs, and related resources. There are more than 500,000 accessions (distinct varieties of plants) in the GRIN database. These accessions represent more than 10,000 species of plants. See the Helps and Hints page if you are having trouble getting your results.

Ag Data Commons