Annotations of Unigenes Assembled from Schizaphis graminum and Sipha flava

Transcriptomes were assembled de novo from pools of adult aphids that were feeding on sorghum and switchgrass. Reads from all replicates were pooled, normalized in silico to 25X coverage, and assembled using Trinity. Only the most abundant isoform for each unigene was retained for annotation and unigenes with transcripts per million mapped reads (TPM) less than 0.5 were removed from the dataset. The remaining unigenes were annotated using Trinotate with BLASTP comparisons against the Swiss-Prot/UniProt database. In addition, Pfam-A assignments were computed using hmmer, signal peptide predictions were performed using SignalP, and transmembrane domain predictions were performed using tmHMM. Gene ontology (GO assignments) were retrieved from Trinotate using the highest scoring BLASTp matches as queries.

Genomics and Genetics

Feedstock Readiness Level Evaluations Summary Table v4.1

The table in this dataset collates the results of the FSRL evaluations listed under the Farm2Fly Ag Data Commons datasets to enable users to quickly identify, review, and compare available evaluations. Feedstock readiness level evaluations are performed for a specific feedstock-conversion process combination and for a particular region. FSRL evaluations complement evaluations of Fuel Readiness Level (FRL) and environmental progress.

Farm2fly Program

Feedstock Readiness Level Evaluations Summary Table v4.0

The table in this dataset collates the results of the FSRL evaluations listed under the Farm2Fly Ag Data Commons datasets to enable users to quickly identify, review, and compare available evaluations. Feedstock readiness level evaluations are performed for a specific feedstock-conversion process combination and for a particular region. FSRL evaluations complement evaluations of Fuel Readiness Level (FRL) and environmental progress.

Farm2fly Program

Feedstock Readiness Level Evaluations Summary Table v3.0

The table in this dataset collates the results of the FSRL evaluations listed under the Farm2Fly Ag Data Commons datasets to enable users to quickly identify, review, and compare available evaluations. Feedstock readiness level evaluations are performed for a specific feedstock-conversion process combination and for a particular region. FSRL evaluations complement evaluations of Fuel Readiness Level (FRL) and environmental progress.

Farm2fly Program

Feedstock Readiness Level Evaluations Summary Table v2.0

The table in this dataset collates the results of the FSRL evaluations listed under the Farm2Fly Ag Data Commons datasets to enable users to quickly identify, review, and compare available evaluations. Feedstock readiness level evaluations are performed for a specific feedstock-conversion process combination and for a particular region. FSRL evaluations complement evaluations of Fuel Readiness Level (FRL) and environmental progress.

Farm2fly Program

Feedstock Readiness Level (FSRL) evaluation: Sorghum bicolor (sweet sorghum), Alcohol-to-Jet, Central East, Mar. 2017

Feedstock readiness level evaluations are performed for a specific feedstock-conversion process combination and for a particular region. FSRL evaluations complement evaluations of Fuel Readiness Level (FRL) and environmental progress. The data from this evaluation, compiled in March 2017, assesses the maturity of Sorghum bicolor (sweet sorghum) as a feedstock for the Alcohol-to-Jet conversion process in the United States Central East region.

Farm2fly Program