The Triticeae Toolbox

The Triticeae Toolbox (T3) webportal hosts data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data from wheat and barley germplasm in the Triticeae CAP integrating rapidly expanding DNA marker and sequence data with traditional phenotypic data.

Ag Data Commons

De novo transcriptome assembly and annotations for wheat curl mite (Aceria tosichella)

To study the impact of wheat streak mosaic virus on global gene expression in wheat curl mite, we generated a de novo transcriptome assembly using 50 x 50 paired end reads from the Illumina HiSeq 2500. Reads were assembled using Trinity (version 2.0.6) and contigs greater than 200 nt were retained. All assembled transcripts were annotated using the Trinotate pipeline using blastp searches against the Swiss-prot/Uni-Prot database, blastx searches against the Swiss-prot/Uni-Prot databases, HMM searches against the Pfam-A database, blastp searches against the non-redundant protein database, and signalP and tmHMM predictions. To reduce noise from low abundance transcripts not well supported by the data, we filtered the assembly to retain only those transcripts with TPM values >=0.5.

Genomics and Genetics

IPM Images: The Source for Agriculture and Pest Management Pictures

A joint project of The University of Georgia - Warnell School of Forestry and Natural Resources and College of Agricultural and Environmental Sciences, The Center for Invasive Species and Ecosystem Health, USDA National Institute of Food and Agriculture, Southern Integrated Pest Management Center, Southern Plant Diagnostic Network, and USDA/APHIS Identification Technology Program, IPM Images image categories include: Commodity Groups; Taxonomy; Biological Controls; Damage Types; and Diseases.

Maps and Multimedia

NUOnet (Nutrient Use and Outcome Network) database

The Nutrient Uptake and Outcomes (NUOnet) database will be able to help establish baselines on nutrient use efficiencies; processes contributing to nutrient losses; and processes contributing to optimal crop yield, nutritional and organoleptic quality. This national database could be used to calculate many different environmental indicators from a comprehensive understanding of nutrient stocks and flows.

Agroecosystems & Environment

Plant Variety Protection Office - Scanned Certificates

This dataset provides the scans of issued certificates for a variety of plants. If you know the certificate number or applicant name simply enter the information in the search box. For certificates issued between 1970 and 1999, add two zeroes in front of the 7-digit number. Alternatively, you can search by selecting a crop from the list.

Plants and Crops

AMIS Market Database

Statistics at a Glance provides summary tables of the main data items currently covered by AMIS (Agricultural Market Information System). There are production, supply, utilization, trade and closing stocks. Users can select a country on the world map and specify their request by selecting one of the four AMIS crops: wheat, maize, rice, or soybeans. Alternatively, users can display aggregate values for total cereals and coarse grains.

Plants and Crops