WeedCast Version 4

The WeedCast Software Suite is a decision aid that currently includes the WeedCast and WheatScout models. These models were created by the USDA ARS and the University of Wisconsin. The software is written in Java and is free to download and use. The source code is released under the GPL.

Agroecosystems & Environment


Stored Grain Advisor (SGA) is a decision support system for managing insect pests of farm-stored wheat. The program predicts the likelihood of insect infestation, and recommends appropriate preventative actions . It also provides advice on how to sample and identify insect pests of stored wheat. SGA Pro was designed for use in commercial elevators as part of the Areawide IPM Project for stored grain. Grain samples are taken with a vacuum probe and processed over an inclined sieve. SGA Pro analyzes the insect data, grain temperatures and moistures, and determines which bins need to be fumigated.

Agricultural Products


Root Zone Water Quality Model 2 (RZWQM2) is a whole-system model for studying crop production and environmental quality under current and changing climate conditions. It emphasizes the effects of agricultural management practices on physical, chemical and biological processes. RZWQM2 is a one-dimensional model with a pseudo 2-dimensional drainage flow. Crop simulation options include the generic plant growth model, DSSAT-CSM 4.0 and HERMES SUCROS models. It also can simulate surface energy balance with components from the SHAW model and water erosion from the GLEAMS model. An automated parameter estimation algorithm (PEST) was added to RZWQM2 for objective model calibration and uncertainty analysis.

Plants and Crops

The Triticeae Toolbox

The Triticeae Toolbox (T3) webportal hosts data generated by the Triticeae Coordinated Agricultural Project (CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). T3 contains SNP, phenotypic, and pedigree data from wheat and barley germplasm in the Triticeae CAP integrating rapidly expanding DNA marker and sequence data with traditional phenotypic data.

Ag Data Commons

De novo transcriptome assembly and annotations for wheat curl mite (Aceria tosichella)

To study the impact of wheat streak mosaic virus on global gene expression in wheat curl mite, we generated a de novo transcriptome assembly using 50 x 50 paired end reads from the Illumina HiSeq 2500. Reads were assembled using Trinity (version 2.0.6) and contigs greater than 200 nt were retained. All assembled transcripts were annotated using the Trinotate pipeline using blastp searches against the Swiss-prot/Uni-Prot database, blastx searches against the Swiss-prot/Uni-Prot databases, HMM searches against the Pfam-A database, blastp searches against the non-redundant protein database, and signalP and tmHMM predictions. To reduce noise from low abundance transcripts not well supported by the data, we filtered the assembly to retain only those transcripts with TPM values >=0.5.

Genomics and Genetics

IPM Images: The Source for Agriculture and Pest Management Pictures

A joint project of The University of Georgia - Warnell School of Forestry and Natural Resources and College of Agricultural and Environmental Sciences, The Center for Invasive Species and Ecosystem Health, USDA National Institute of Food and Agriculture, Southern Integrated Pest Management Center, Southern Plant Diagnostic Network, and USDA/APHIS Identification Technology Program, IPM Images image categories include: Commodity Groups; Taxonomy; Biological Controls; Damage Types; and Diseases.

Maps and Multimedia